| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126453530
Identifier: 126453530
GI number: 126453530
Start: 1157331
End: 1158506
Strand: Reverse
Name: 126453530
Synonym: BURPS1106A_1177
Alternate gene names: NA
Gene position: 1158506-1157331 (Counterclockwise)
Preceding gene: 126453485
Following gene: 126454753
Centisome position: 29.05
GC content: 65.39
Gene sequence:
>1176_bases ATGCTGATCGATTTTTTCTATTCGCTGCGCGCGGCGAAGCTGCCGGTGTCGGTCAAGGAATACCTGACGCTGCTCGAAGC GCTGAAGGCGCAGGTGATCGAGCCGTCGCTCGACGCGTTCTACTTTCTCGCGCGCCTGACGCTCGTGAAGGACGAGCAGT ACTTCGACAAGTTCGACAAGGCGTTCGGCGCGTACTTCCACGGCGTGTCCGCGCTGCCCGCGGACGCGTTCGACATCCCG CTCGACTGGCTCGAAAAGCGCTTGCAACGCGAGCTCACGCCCGAGGAGAAGGCGCAGATCCAGGCGCTCGGCGGCCCCGA CAAGCTGATGGAGCGCCTGAAGCAACTGCTCGACGAGCAGAAGGCGCGCCACGAAGGCGGCAACAAGTGGATCGGCACGG GCGGCACGTCGCCGTTCGGGCACGGCGGCTACAACCCGGAGGGCGTCCGGATCGGCGGGCCGTCGAACGGCAACCGCACC GCGGTCAAGGTATGGGAAGCGCGCGCGTATCGCGATTACGACGATTCGGTCGAAATCGGCACGCGCAACATCAAGGTCGC GCTGCGGCGGCTGCGCCGCTTCGCGCGCGAAGGCGCGGCCGAGGAGCTCGATCTGCCCGGCACGATCCGCAGCACCGCCG CGAACGCCGGCTGGCTCGATCTGCGGATGGTGCCCGAGCGCCACAACAACGTGAAGGTGCTGATGCTGCTAGACGTCGGC GGCTCGATGGACGACCACATCAAGCGCACCGAGGAGCTCTTCTCCGCCGCGAAGGCCGAGTTCAAGCACCTCGAGTTCTA TTACTTCCACAACTGCGTATACGACCATCTGTGGAAGAACAACCGCCGCCGTCACGCGGAGCGCACGCCGACCTGGGACG TACTGCACAAGTTCACGCCCGATTACAAGCTGATCTTCGTCGGCGACGCAACGATGAGCCCGTACGAGGTGCTGCAGCCG GGCGGCTCGGTCGAATACAACAATCCGGAGGCGGGCGCCGTGTGGCTGCGCCGTCTCGCCGATCAGTTCCCGCACTACGC GTGGCTCAATCCGGAGCCCGAGCGGCTCTGGGAATACCGGCAGTCGATCGCGATCATCCGCGACGTGCTCGGCGACCGGA TGTATCCGCTCACGCTCGCGGGCCTCGAATCCGCGATGCGCACGCTGAGCAAGTGA
Upstream 100 bases:
>100_bases CGCCCGACGCGGGCGCGCTGCGGCCCGCCGGCGGCTTGCGGCGAGCCGGTGCGCCGCCGCTTGGCCGCCCGGCTCGCCGC GACGATCCGAGGGCCCGCCG
Downstream 100 bases:
>100_bases CGCGCCCGCCGCGCGCGTCGCCCCGCCGATTCCGCCGTTTTTCAACGCTTCACCTTCACCACCCCGGACCCGACGTTTCA CCGATGAGCAGCCAGCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MLIDFFYSLRAAKLPVSVKEYLTLLEALKAQVIEPSLDAFYFLARLTLVKDEQYFDKFDKAFGAYFHGVSALPADAFDIP LDWLEKRLQRELTPEEKAQIQALGGPDKLMERLKQLLDEQKARHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHAERTPTWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHYAWLNPEPERLWEYRQSIAIIRDVLGDRMYPLTLAGLESAMRTLSK
Sequences:
>Translated_391_residues MLIDFFYSLRAAKLPVSVKEYLTLLEALKAQVIEPSLDAFYFLARLTLVKDEQYFDKFDKAFGAYFHGVSALPADAFDIP LDWLEKRLQRELTPEEKAQIQALGGPDKLMERLKQLLDEQKARHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHAERTPTWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHYAWLNPEPERLWEYRQSIAIIRDVLGDRMYPLTLAGLESAMRTLSK >Mature_391_residues MLIDFFYSLRAAKLPVSVKEYLTLLEALKAQVIEPSLDAFYFLARLTLVKDEQYFDKFDKAFGAYFHGVSALPADAFDIP LDWLEKRLQRELTPEEKAQIQALGGPDKLMERLKQLLDEQKARHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHAERTPTWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHYAWLNPEPERLWEYRQSIAIIRDVLGDRMYPLTLAGLESAMRTLSK
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44851; Mature: 44851
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIDFFYSLRAAKLPVSVKEYLTLLEALKAQVIEPSLDAFYFLARLTLVKDEQYFDKFDK CEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH AFGAYFHGVSALPADAFDIPLDWLEKRLQRELTPEEKAQIQALGGPDKLMERLKQLLDEQ HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHHHHHHHH KARHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHAERTPTWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHYAWLNPEPERLWEYR CEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSIAIIRDVLGDRMYPLTLAGLESAMRTLSK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLIDFFYSLRAAKLPVSVKEYLTLLEALKAQVIEPSLDAFYFLARLTLVKDEQYFDKFDK CEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH AFGAYFHGVSALPADAFDIPLDWLEKRLQRELTPEEKAQIQALGGPDKLMERLKQLLDEQ HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHHHHHHHH KARHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHAERTPTWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHYAWLNPEPERLWEYR CEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSIAIIRDVLGDRMYPLTLAGLESAMRTLSK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA