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The map label for this gene is lpfC [H]

Identifier: 126454737

GI number: 126454737

Start: 2082173

End: 2084674

Strand: Reverse

Name: lpfC [H]

Synonym: BURPS1106A_2088

Alternate gene names: 126454737

Gene position: 2084674-2082173 (Counterclockwise)

Preceding gene: 126454040

Following gene: 126452242

Centisome position: 52.27

GC content: 67.11

Gene sequence:

>2502_bases
ATGCTGGCCGCCGCGCTCACGGCGCTTTCGGCGACCGCTCGCGGCCAACAGGCGCTGGAGTTCGATCCCGCCTTTCTCGA
GCTGGGCGGCGGCCAGGGCGGAGCCGATCTTTCCGTGTACGCGACATCGAACCGCGTGCTGCCCGGCGTCTATCCGGTAT
CGGTCTTCGTCAACGGCGAGGCGATCGAGCGGCGCGACATCACGTTCGTGTCCGAAAGCGCGCGCGACGGGCGGGAAGAC
GCGATCCCCTGCCTGAGCGCCCGGATGTTCGACGAATGGGGCGTCGACATCGCCGCGTTTGCGAAGCTCGCGCAAGCCGG
CGAAGACGCATGCGTCGACATCGCCGACAGCGTGCCCCACGCGCGAACCGAGTTCGACAGTCATCAACTGCGGTTGAACG
TAACGGTGCCCCAGGCCGCGTTGAAGCGGCGCGCGCGCGGCGCGGTGGACCCGGCGCGCTGGGATCAGGGTATCGACGCC
GCGCTGCTCGACTATCAACTGAGCGCTGCCCAGTACGCCGGCGGCAATTTCGCGTCCGCCCGTTCGCGCACGACGTTGTA
TGCGGGGTTGCGCGGCGCCGTCAATCTGGGCGCATGGCGGCTGTCGCACACGTCGTCGTTTCTGCGCGGGCTCGACGGCC
GGAATCGCTTTCAGATCGTCAATACGTTCGTCCAGCGCGACATCGCCGGCTGGAACAGCCGCCTCACCGCCGGGGAGGGC
ACCACGCCCGCGAACATTTTCGACGGATTTCAGTTTCTCGGCGTGCAACTCAATACCGACGAGACCATGCTGCCCGACAG
TCTGCAGGGCTACGCGCCCACCGTGCACGGCGTCGCGCAGACCAATGCGCAGGTGACGATCAGGCAGAATGGTTTCGTCA
TCTACAGCACCTACGTGCCGCCGGGGCCGTTTACGATCGACGATCTTTATCCGACGTCGTCGTCGGGCAATCTGGAAGTG
ACGATTACCGAGGCCGACGGGCACGTCACGACATTCACGCAACCGTACTCCGCGGTGCCGATGTTGCTGCGCGACGGTTC
GTGGCGGTATAACGTCACGGCGGGCCAATACCGTGACGGCATTTCAGGCTCGCATCCGAGCTTTGCGATGGCGACGCTCG
CGCGCGGGCTGGCGGGCGAATTCTCGTTGTACGGCGGTTTCATCGGGGCCGGCATGTATCAATCGGTGCTCGTCGGAATC
GGCAAGAACCTGGGCAGCATCGGCGCGGTATCGCTCGACGTGTCGCACGCGCGCAGCGCGGTCGACCTGGCCGACAGCAG
CACGGTGTCGGGGCATGCCTTTCGCGTGCTTTACGCGAAGGCCGTGGGCAGTTGGGGCACCGATTTCCGGTTGCTCGCAT
ACCGCTACTCCACCGCCGGCTATCGAAGCTTCGCCGATGCGGTGCAACTGCGCGACGGCAGCGAGCCCGCGGCGCTGGGC
GCAAAGCGCCAGCGCCTCGAGGGCACGGTGAACCAGCGTCTCGGCCGCCTCGGCTCGATGTACGCGACCGTGGCCGTGCA
GACCTACTGGGGCAGCGCGGCGCGCAGCACCGTGTATCAGCTCGGGCACAGCGGGAATTGGGGGCGCGCCAGCTACGGAC
TCTATGCGGCCTATAGCAAAGGAAGCGGCGTGCCGTCGAGCTGGAACGTCTCGTTGTCGCTATCGATGCCGCTGGAAGTG
CTTTTCGGGGGCGCGCGCGTGCGTGCGCCGGCGGGCGGCAGTGCGAATGTCTCGTACTTCGTCAGCCGGAACAACGAGAA
CCACGTCAATCAACAGATGACGGCCAGCGGCAGCAGCAGCGAGCAGCGCCTGAACTACAGCGTGGGCGTCGCGCATTCCA
GCGAGTCGGACGTGAGCGGCTCGGTGTCGGCCAGCTACCTCGCGCCGTTCGGCCGCTACGACGCGTCGATCGGCAGCGGC
CGCGGGTACACGCAGGCCGCATTCACTGCCGCCGGCGGCATGCTGTGGCATGGCACCGGAGTGTTGTTCACGCAACCGCT
CGGCGAGACCGTGGCGGTCGTGGACGTGCCGAACGTGCAGGGCGTGCGTTTCGAAATGCACCCGGGCGTGAGCACGGATC
GGGCGGGCGAAGCGGTGATTCCGCGGCTGAACCCCTATCGGGTCAACCGCATCGTCGTCGACCAGCGCCGGATGCCGCAG
GACGTGGAGATCCGCAACCCGGTGAGCGAAGTCGTGCCCACCCGGGCGGCGGTCGTTCAAACGCACTTCGATTCCGTCGT
CGGGCTTCGCGCGCTGTTCACGTTGATGCGCGCGGACGGCTCGTTTCCGCCGCAGGGCGCGACGGCCGAGAACGACGAGG
GACAGGTGCTCGGCGTCGTCGGGATGGACGGCGAGACGTTCGTGGCGGGCTTGCCCGCCGCCGAAGGGCATTTCGTCGTT
CGCTGGGGGGCGGCGCGACAGAATCGCTGCCGCGTGAATTACGCGCTGCCCGGAAAGGCGGCGATCGGCGCGTACTTGGC
CGTGGAGGCGATATGCGATTGA

Upstream 100 bases:

>100_bases
GACGGCCCAACCGGCCGGTACGCCCGAGGCCGCGCCGCAGTAGGACGCGATGATTCGGCATCGTGTCGCCGATGTCGGCT
TCTCGCGCATACGAGTGACC

Downstream 100 bases:

>100_bases
AACGCGAACGGCGTGCGCGGCGCTCCCGCCTGCCCGCGGCGGCAGGCGGCCTGTGGCTTGTCGTTGCCGCGCTGCCGCCC
GGCGCACGGGCAGCGACTTG

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 833

Protein sequence:

>833_residues
MLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIERRDITFVSESARDGRED
AIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDA
ALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTFVQRDIAGWNSRLTAGEG
TTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEV
TITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGI
GKNLGSIGAVSLDVSHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALG
AKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSGVPSSWNVSLSLSMPLEV
LFGGARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVSASYLAPFGRYDASIGSG
RGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVQGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIVVDQRRMPQ
DVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVV
RWGAARQNRCRVNYALPGKAAIGAYLAVEAICD

Sequences:

>Translated_833_residues
MLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIERRDITFVSESARDGRED
AIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDA
ALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTFVQRDIAGWNSRLTAGEG
TTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEV
TITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGI
GKNLGSIGAVSLDVSHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALG
AKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSGVPSSWNVSLSLSMPLEV
LFGGARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVSASYLAPFGRYDASIGSG
RGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVQGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIVVDQRRMPQ
DVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVV
RWGAARQNRCRVNYALPGKAAIGAYLAVEAICD
>Mature_833_residues
MLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIERRDITFVSESARDGRED
AIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDA
ALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTFVQRDIAGWNSRLTAGEG
TTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEV
TITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGI
GKNLGSIGAVSLDVSHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALG
AKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSGVPSSWNVSLSLSMPLEV
LFGGARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVSASYLAPFGRYDASIGSG
RGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVQGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIVVDQRRMPQ
DVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVV
RWGAARQNRCRVNYALPGKAAIGAYLAVEAICD

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786744, Length=838, Percent_Identity=37.1121718377088, Blast_Score=518, Evalue=1e-148,
Organism=Escherichia coli, GI1790772, Length=852, Percent_Identity=35.7981220657277, Blast_Score=489, Evalue=1e-139,
Organism=Escherichia coli, GI1787172, Length=853, Percent_Identity=35.7561547479484, Blast_Score=480, Evalue=1e-136,
Organism=Escherichia coli, GI1789533, Length=832, Percent_Identity=33.5336538461538, Blast_Score=450, Evalue=1e-127,
Organism=Escherichia coli, GI1786332, Length=822, Percent_Identity=32.8467153284672, Blast_Score=403, Evalue=1e-113,
Organism=Escherichia coli, GI1788427, Length=806, Percent_Identity=29.2803970223325, Blast_Score=308, Evalue=9e-85,
Organism=Escherichia coli, GI87081778, Length=811, Percent_Identity=28.7299630086313, Blast_Score=265, Evalue=9e-72,
Organism=Escherichia coli, GI1789610, Length=803, Percent_Identity=26.1519302615193, Blast_Score=144, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 88579; Mature: 88579

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00399 SUCCINYL_COA_LIG_2 ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGE
CHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEECCC
AIERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPH
EECCCCEEEEECCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHCCCC
ARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASA
CCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCEEHHHEEHHHHHHCCCCCCCC
RSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTFVQRDIAGWNSRLTAGEG
CCCEEEEECCCCCEECCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
TTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVP
CCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEECCC
PGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDG
CCCEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHCCCEEECCCEEEEEECCCCCCC
ISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVSHARSA
CCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
VDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALG
HCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHC
AKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSK
HHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC
GSGVPSSWNVSLSLSMPLEVLFGGARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSS
CCCCCCCEEEEEEECCCCEEEECCCEEECCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
EQRLNYSVGVAHSSESDVSGSVSASYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTG
CCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCC
VLFTQPLGETVAVVDVPNVQGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIVVDQRRMPQ
EEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCC
DVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVV
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
GMDGETFVAGLPAAEGHFVVRWGAARQNRCRVNYALPGKAAIGAYLAVEAICD
ECCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHEEEECCC
>Mature Secondary Structure
MLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGE
CHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEECCC
AIERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPH
EECCCCEEEEECCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHCCCC
ARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASA
CCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCEEHHHEEHHHHHHCCCCCCCC
RSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTFVQRDIAGWNSRLTAGEG
CCCEEEEECCCCCEECCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
TTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVP
CCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEECCC
PGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDG
CCCEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHCCCEEECCCEEEEEECCCCCCC
ISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVSHARSA
CCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
VDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALG
HCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHC
AKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSK
HHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC
GSGVPSSWNVSLSLSMPLEVLFGGARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSS
CCCCCCCEEEEEEECCCCEEEECCCEEECCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
EQRLNYSVGVAHSSESDVSGSVSASYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTG
CCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCC
VLFTQPLGETVAVVDVPNVQGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIVVDQRRMPQ
EEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCC
DVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVV
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
GMDGETFVAGLPAAEGHFVVRWGAARQNRCRVNYALPGKAAIGAYLAVEAICD
ECCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]