| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454691
Identifier: 126454691
GI number: 126454691
Start: 2579919
End: 2581061
Strand: Reverse
Name: 126454691
Synonym: BURPS1106A_2618
Alternate gene names: NA
Gene position: 2581061-2579919 (Counterclockwise)
Preceding gene: 126453555
Following gene: 126453263
Centisome position: 64.71
GC content: 68.15
Gene sequence:
>1143_bases ATGAAACATTCCGCCTTTTCCTCCCGCGCGATTCAGGTCTCGGTGCTGGCGCTCGCGCTGGCCGCGCTCGCCGGCTGCGA CACGCTGAACGACTATCTCGCGCCCGACCGGGTCAACTACAAGTCCACCGGCTCGGCGCCGCCGCTGCAGGTGCCGCAGG ATCTGACGGCGATGCCGCTCAGCCCGTCGTACGTCGCGCCGCCGACCAATTCGGGCCTCGGTTCCGCGCCGACGCGCGCG GTGACGGCCGCGGGCAACGCGACGGAAGGGCAGCCGAGCGCGCAGGATCCGTTCGGGATGCACGTCGAGCGCGACGGCGA CCGCCGCTGGCTCGTCGTCGACGGCCGCACGCCCGAGCAGCTCTGGCCGCAGTTGAAGGAGTTCTGGCAGGACAACGGCT TCGCACTGAAGACGGACGCGCCGTCGACGGGCATCATGGCGACCGACTGGGCGGAGAACCGCGCGAACATTCCCGACGAC TGGTTCCGCCGCACGATCGGCCGTGTGATCGATTTCGCCTATTCGTCGGGCACGCGCGATCGGTTCCGTACGCTCGTCAC GCGCACGGCGGACGGCAACACGGACATCTCGATCACGCACAGCGCGATGGAGGAGAAGCTGACGGGCGCGCAGGGCGGCA CGTCGTCGCGCTGGGAAGAGCGTCCGCGCAACCCGGTGCTCGAGGCCGTGTTCCTCGCGAAGCTGATGGAGAAGTTCGGT TTGACCGACGCGCAGGCGAAGCAACTGCTCGCCGACGCGCGTCCAGCCACCGCGCCCGCGACCGTCGTCGGCTCCGGTGC CGCGTCGACGCTCGATCTGGCCGAATCGTTCGACCGGGCGTGGCTGCGTGTCGGGCTCGCGCTCGACCGCACGAACTTCA CGGTCGACAACCGGGATCGCGCGAAGGGCGTCTATTACGTGCGTTACGCGAACTCGATGGAGGAGCTCAAGCGCGACGGC CTGTTCGGCAAGCTGTTCTACGGCGGCCCGACGGCGGCGAAGCCGGGCAAGGAATTCCTCGTCAACGTGCGCGCGCAAGG CGACGCGAAGACGCAAGTGGCCGTCATCGATGCAAACGGCCAGATCGACACCTCTTCCGATGCGCAGCGGATCATCTCGC TGCTGCACGCGCAGTTGAACTAA
Upstream 100 bases:
>100_bases GGCCGCCCGGGCGGCCGCACCGTACCCCGATCGATCCGACGCTGGCCCGGACGCTCCCGGCGCCGCGCGTGACACGCGTT CTAGCAAGACGAAGGACTTC
Downstream 100 bases:
>100_bases GCGCGTGCGATTCGCGAGCCTCGGAAGCGGCAGCGAAGGCAATGCGCTCGTCGTCGAAGCATCGAACGGCGCGACGACGA CACGTGTGCTGCTCGATTGC
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKHSAFSSRAIQVSVLALALAALAGCDTLNDYLAPDRVNYKSTGSAPPLQVPQDLTAMPLSPSYVAPPTNSGLGSAPTRA VTAAGNATEGQPSAQDPFGMHVERDGDRRWLVVDGRTPEQLWPQLKEFWQDNGFALKTDAPSTGIMATDWAENRANIPDD WFRRTIGRVIDFAYSSGTRDRFRTLVTRTADGNTDISITHSAMEEKLTGAQGGTSSRWEERPRNPVLEAVFLAKLMEKFG LTDAQAKQLLADARPATAPATVVGSGAASTLDLAESFDRAWLRVGLALDRTNFTVDNRDRAKGVYYVRYANSMEELKRDG LFGKLFYGGPTAAKPGKEFLVNVRAQGDAKTQVAVIDANGQIDTSSDAQRIISLLHAQLN
Sequences:
>Translated_380_residues MKHSAFSSRAIQVSVLALALAALAGCDTLNDYLAPDRVNYKSTGSAPPLQVPQDLTAMPLSPSYVAPPTNSGLGSAPTRA VTAAGNATEGQPSAQDPFGMHVERDGDRRWLVVDGRTPEQLWPQLKEFWQDNGFALKTDAPSTGIMATDWAENRANIPDD WFRRTIGRVIDFAYSSGTRDRFRTLVTRTADGNTDISITHSAMEEKLTGAQGGTSSRWEERPRNPVLEAVFLAKLMEKFG LTDAQAKQLLADARPATAPATVVGSGAASTLDLAESFDRAWLRVGLALDRTNFTVDNRDRAKGVYYVRYANSMEELKRDG LFGKLFYGGPTAAKPGKEFLVNVRAQGDAKTQVAVIDANGQIDTSSDAQRIISLLHAQLN >Mature_380_residues MKHSAFSSRAIQVSVLALALAALAGCDTLNDYLAPDRVNYKSTGSAPPLQVPQDLTAMPLSPSYVAPPTNSGLGSAPTRA VTAAGNATEGQPSAQDPFGMHVERDGDRRWLVVDGRTPEQLWPQLKEFWQDNGFALKTDAPSTGIMATDWAENRANIPDD WFRRTIGRVIDFAYSSGTRDRFRTLVTRTADGNTDISITHSAMEEKLTGAQGGTSSRWEERPRNPVLEAVFLAKLMEKFG LTDAQAKQLLADARPATAPATVVGSGAASTLDLAESFDRAWLRVGLALDRTNFTVDNRDRAKGVYYVRYANSMEELKRDG LFGKLFYGGPTAAKPGKEFLVNVRAQGDAKTQVAVIDANGQIDTSSDAQRIISLLHAQLN
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41190; Mature: 41190
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHSAFSSRAIQVSVLALALAALAGCDTLNDYLAPDRVNYKSTGSAPPLQVPQDLTAMPL CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSYVAPPTNSGLGSAPTRAVTAAGNATEGQPSAQDPFGMHVERDGDRRWLVVDGRTPEQ CCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCHHH LWPQLKEFWQDNGFALKTDAPSTGIMATDWAENRANIPDDWFRRTIGRVIDFAYSSGTRD HHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH RFRTLVTRTADGNTDISITHSAMEEKLTGAQGGTSSRWEERPRNPVLEAVFLAKLMEKFG HHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC LTDAQAKQLLADARPATAPATVVGSGAASTLDLAESFDRAWLRVGLALDRTNFTVDNRDR CCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCEECCCCC AKGVYYVRYANSMEELKRDGLFGKLFYGGPTAAKPGKEFLVNVRAQGDAKTQVAVIDANG CCCEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEEECCCCCCEEEEEEECCC QIDTSSDAQRIISLLHAQLN CCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKHSAFSSRAIQVSVLALALAALAGCDTLNDYLAPDRVNYKSTGSAPPLQVPQDLTAMPL CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSYVAPPTNSGLGSAPTRAVTAAGNATEGQPSAQDPFGMHVERDGDRRWLVVDGRTPEQ CCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCHHH LWPQLKEFWQDNGFALKTDAPSTGIMATDWAENRANIPDDWFRRTIGRVIDFAYSSGTRD HHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH RFRTLVTRTADGNTDISITHSAMEEKLTGAQGGTSSRWEERPRNPVLEAVFLAKLMEKFG HHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC LTDAQAKQLLADARPATAPATVVGSGAASTLDLAESFDRAWLRVGLALDRTNFTVDNRDR CCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCEECCCCC AKGVYYVRYANSMEELKRDGLFGKLFYGGPTAAKPGKEFLVNVRAQGDAKTQVAVIDANG CCCEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEEECCCCCCEEEEEEECCC QIDTSSDAQRIISLLHAQLN CCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]