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The map label for this gene is yafV [C]

Identifier: 126454542

GI number: 126454542

Start: 3245506

End: 3246333

Strand: Direct

Name: yafV [C]

Synonym: BURPS1106A_3322

Alternate gene names: 126454542

Gene position: 3245506-3246333 (Clockwise)

Preceding gene: 126452785

Following gene: 126453927

Centisome position: 81.37

GC content: 70.77

Gene sequence:

>828_bases
ATGACCGATCGCCACGCCTCAGCCTCGCCGTTCCCGGTCGCCGCGCTGCAGATGGTCAGCACGCCCGATCGCGAGCGCAA
TCTCGCCGAAGCCGGCCGGCTGATCGCCGATGCGGCGGCCTCGGGCGCACGGCTCGTGCTGCTGCCCGAATATTTCTGCT
TCATGGGCCACCAGGACACCGACAAGCTCGCGCTCGCGGAAGCGTACCGTGACGGCCCGATCCAGCGCTTTCTCGCCGAG
CGCGCGAAGGCGCACGGCATCTGGGTGATCGGCGGCACGCTGCCGCTGAAGGCGCCCGAGCCGTCGCGCGTGCTGAACAC
GACGCTCGTGTTCGATCCGCAAGGCCGCGAGGCCGCCCGCTACGACAAGATCCACCTGTTCAACTTCGAGAAGGGCGACG
AGTCGTTCGACGAGGCGCGCACGATCCGCCCGGGCGACGCGGTGCGCACGTTCGACGCGCCGTTCGGCCGGGTCGGGCTG
TCGGTCTGCTACGATCTGCGCTTTCCGGAGCTGTACCGGCGAATGGGCGACTGCGCGATGATCGTCGTGCCGTCGGCGTT
CACGTACACGACAGGGCGCGCGCACTGGGAGACGCTGTTGCGCGCCCGCGCGGTCGAGAACCAGTGCTACGTGCTCGCCG
CCGCGCAAGGCGGCAAGCACGAGAACGGCCGCCGCACGTGGGGCCGCAGCATGCTCGTCGATCCGTGGGGCGAGATCGTC
GCGGTGCGCGACGAAGGCGCGGGCGTCGTCGCGGGCGAGATCGATCCCGCGCGGATCGCCGACGTGCGGCAGAGCCTGCC
CGCGTGGCGGCATCGCGTGCTCGCGTGA

Upstream 100 bases:

>100_bases
CGGCGATCGGGGTAAGATGGGCTTCGCGCCCGCGGCCGTCGAGCACTGAAGCGGCCGCCGGGCCCGCACCCTTTTTTCGG
CCACCGCCACCGAATTCGTC

Downstream 100 bases:

>100_bases
GCGGCGATCCGCCCGACCGGAAAGAAGAAAGAAGGCGCGTCCGACAACCGTTTCAGAATTTGAGAATCCCCGAATCCGCA
TGAACATCATCGAACCCGGC

Product: carbon-nitrogen family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTDRHASASPFPVAALQMVSTPDRERNLAEAGRLIADAAASGARLVLLPEYFCFMGHQDTDKLALAEAYRDGPIQRFLAE
RAKAHGIWVIGGTLPLKAPEPSRVLNTTLVFDPQGREAARYDKIHLFNFEKGDESFDEARTIRPGDAVRTFDAPFGRVGL
SVCYDLRFPELYRRMGDCAMIVVPSAFTYTTGRAHWETLLRARAVENQCYVLAAAQGGKHENGRRTWGRSMLVDPWGEIV
AVRDEGAGVVAGEIDPARIADVRQSLPAWRHRVLA

Sequences:

>Translated_275_residues
MTDRHASASPFPVAALQMVSTPDRERNLAEAGRLIADAAASGARLVLLPEYFCFMGHQDTDKLALAEAYRDGPIQRFLAE
RAKAHGIWVIGGTLPLKAPEPSRVLNTTLVFDPQGREAARYDKIHLFNFEKGDESFDEARTIRPGDAVRTFDAPFGRVGL
SVCYDLRFPELYRRMGDCAMIVVPSAFTYTTGRAHWETLLRARAVENQCYVLAAAQGGKHENGRRTWGRSMLVDPWGEIV
AVRDEGAGVVAGEIDPARIADVRQSLPAWRHRVLA
>Mature_274_residues
TDRHASASPFPVAALQMVSTPDRERNLAEAGRLIADAAASGARLVLLPEYFCFMGHQDTDKLALAEAYRDGPIQRFLAER
AKAHGIWVIGGTLPLKAPEPSRVLNTTLVFDPQGREAARYDKIHLFNFEKGDESFDEARTIRPGDAVRTFDAPFGRVGLS
VCYDLRFPELYRRMGDCAMIVVPSAFTYTTGRAHWETLLRARAVENQCYVLAAAQGGKHENGRRTWGRSMLVDPWGEIVA
VRDEGAGVVAGEIDPARIADVRQSLPAWRHRVLA

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI9910460, Length=268, Percent_Identity=38.0597014925373, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI297632350, Length=275, Percent_Identity=36.7272727272727, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI5031947, Length=267, Percent_Identity=37.0786516853933, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI297632348, Length=275, Percent_Identity=36.7272727272727, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI297632346, Length=192, Percent_Identity=31.7708333333333, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1786412, Length=231, Percent_Identity=29.4372294372294, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17556280, Length=265, Percent_Identity=41.1320754716981, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6323383, Length=271, Percent_Identity=35.4243542435424, Blast_Score=169, Evalue=6e-43,
Organism=Saccharomyces cerevisiae, GI6322335, Length=295, Percent_Identity=32.5423728813559, Blast_Score=149, Evalue=4e-37,
Organism=Drosophila melanogaster, GI17933642, Length=266, Percent_Identity=37.218045112782, Blast_Score=187, Evalue=5e-48,
Organism=Drosophila melanogaster, GI21355835, Length=268, Percent_Identity=33.2089552238806, Blast_Score=154, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 30462; Mature: 30331

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRHASASPFPVAALQMVSTPDRERNLAEAGRLIADAAASGARLVLLPEYFCFMGHQDT
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCC
DKLALAEAYRDGPIQRFLAERAKAHGIWVIGGTLPLKAPEPSRVLNTTLVFDPQGREAAR
HHHHHHHHHCCCHHHHHHHHHHHHCEEEEECCEEECCCCCCCCEEEEEEEECCCCCCCCC
YDKIHLFNFEKGDESFDEARTIRPGDAVRTFDAPFGRVGLSVCYDLRFPELYRRMGDCAM
CCEEEEEECCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHEECCCHHHHHHHCCEEE
IVVPSAFTYTTGRAHWETLLRARAVENQCYVLAAAQGGKHENGRRTWGRSMLVDPWGEIV
EEECCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCCEEECCCCCEE
AVRDEGAGVVAGEIDPARIADVRQSLPAWRHRVLA
EEEECCCEEEECCCCHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure 
TDRHASASPFPVAALQMVSTPDRERNLAEAGRLIADAAASGARLVLLPEYFCFMGHQDT
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCC
DKLALAEAYRDGPIQRFLAERAKAHGIWVIGGTLPLKAPEPSRVLNTTLVFDPQGREAAR
HHHHHHHHHCCCHHHHHHHHHHHHCEEEEECCEEECCCCCCCCEEEEEEEECCCCCCCCC
YDKIHLFNFEKGDESFDEARTIRPGDAVRTFDAPFGRVGLSVCYDLRFPELYRRMGDCAM
CCEEEEEECCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHEECCCHHHHHHHCCEEE
IVVPSAFTYTTGRAHWETLLRARAVENQCYVLAAAQGGKHENGRRTWGRSMLVDPWGEIV
EEECCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCCEEECCCCCEE
AVRDEGAGVVAGEIDPARIADVRQSLPAWRHRVLA
EEEECCCEEEECCCCHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]