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The map label for this gene is ywhC [H]

Identifier: 126454528

GI number: 126454528

Start: 2583944

End: 2584609

Strand: Reverse

Name: ywhC [H]

Synonym: BURPS1106A_2622

Alternate gene names: 126454528

Gene position: 2584609-2583944 (Counterclockwise)

Preceding gene: 126453661

Following gene: 126451704

Centisome position: 64.8

GC content: 66.82

Gene sequence:

>666_bases
ATGGATGCTTCTTCCCTGATACAGACGATTGCCGTCTACGCACTGCCCGTGGTCTTCGCGATCACGCTGCACGAGGCCGC
CCACGGCTACGTCGCTCGCCTGCTGGGCGACAACACCGCGTACATGATGGGCCGCGTGTCGTTCAACCCGATGCGCCACA
TCGATCCGTTCGGCACGATCGTGATTCCGCTCGTGCTGTACTTCCTCACGAGCGGCGCGTTCCTGTTCGGCTACGCGAGG
CCCGTGCCCGTCACGTTCCGCAATCTGCGCAATCCTCGCTGGGGAAGCCTCTGGGTCGCGCTCGCGGGGCCGGGCTGCAA
TTTCGTCCAGGCGCTGATCTGGGGCTTCGTGAGCATCGGCCTCGCCGCGCTGGCGGTCGACGAGCCGTTCTTCACGCGCA
TGGCCGGAGCGGGCGTCGGCGTGAATCTCGTGCTCGCGGTGCTGAACCTCTTTCCGCTGCCGCCGCTCGACGGCGGGCGC
GTGCTCGCGGCGCTGCTGCCGCCGAAGCAATCGATCGCGCTATCTCGGCTCGAGCCGTACGGCTTCTTCATCGTGCTCGC
GCTCGTCGCGACGGGCCTGCTGACGAAACTCTGGCTGCGGCCGCTGGTGGGCGCCGGCTATGCCGTCGTGACGGCCATCC
TGACTCCTTTCGCCTCGCTCTTCTAA

Upstream 100 bases:

>100_bases
GAGCGCCGCCGCGCCGTCCCGGCGCACCGGAGCGGCCGCCGTTTCGGTCCGCACGCATGCGCGCCGTTCGCGCGTTTGCC
GCTTGTTACAATAACGCGCT

Downstream 100 bases:

>100_bases
CGACAATCATGTTCCCAGACCGTATCTTTTCCGGCATGCGACCCACGGGGTCGCTCCATCTCGGCCACTATCACGGCGTG
CTGAAGAACTGGGTCAAGCT

Product: M50 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVALAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF

Sequences:

>Translated_221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVALAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
>Mature_221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVALAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23715; Mature: 23715

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCHHHH
VIPLVLYFLTSGAFLFGYARPVPVTFRNLRNPRWGSLWVALAGPGCNFVQALIWGFVSIG
HHHHHHHHHHCCHHEECCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
LAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGRVLAALLPPKQSIALSRLEPY
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCHH
GFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCHHHH
VIPLVLYFLTSGAFLFGYARPVPVTFRNLRNPRWGSLWVALAGPGCNFVQALIWGFVSIG
HHHHHHHHHHCCHHEECCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
LAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGRVLAALLPPKQSIALSRLEPY
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCHH
GFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]