Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 126454413

GI number: 126454413

Start: 2226441

End: 2227331

Strand: Reverse

Name: nlpD [C]

Synonym: BURPS1106A_2237

Alternate gene names: 126454413

Gene position: 2227331-2226441 (Counterclockwise)

Preceding gene: 126454697

Following gene: 126452489

Centisome position: 55.84

GC content: 68.01

Gene sequence:

>891_bases
ATGCTGCGCGCGATGCAAAACAATCGTTCGAAGGTTCCGCTCTCGCTCGCTCAGCGCGCGATTTGCATGGCGGCGTTCGC
GCTGCTCGGCGCGTGCGCGACGCGGCTCGATCAGGCGCCCGTCGTCGACCGCTCCGGCTCGCTCGGCACGACGGCCGCCA
CGCAGCCGCCCGCGCCGCTGCCGCCCGCGCCTCCGGGTTACTACCGGGTGAAGCCGGGCGACACGCTTTATCGGATCGCG
CTCGAGAACGGCCAGAACTATCGCGACATCGCCGCGTGGAACAACCTGACCAACCCGAATCAGATCGAAGTCGATCAGTT
GCTGCGCGTGTCGCCGACCGCGGGCGGCGCGACGGCGGCCGCGCCTGCCGCGGGCGCGGTGGTCACGCCGCCGCTGTCGA
GCGGCCCGTCGAACGGCGCCGCCGCGGTGCCGCCGATCTATGGCTCCGGTTCCACCGCGAGCGCCGCGCCGAGCGCGCCG
GCCGCATCCGCGTCGAGCGAGCCGAGCGCGCCCGCCGCGAACGGCAACGTGTCGTTCGCGTGGCCGGTGCGCGGCGCGCT
GCTGAACACGTTCGACGATTCGAAGAACAAGGGGATCAACATCGGCGGCCCCGCCGGCGAGGCCGTGAAGGCCGCCGCGG
ATGGTCGCGTGGTGTACGCGGGCAACGGGCTGCGCGGCTACGGCAACCTCATTATCATCAAGCACGACGCAACTTATCTC
ACGGCGTATGCACACAATCGCGCTTTGATGGTAAAAGAGGGGGACGCGGTGACGAAAGGCCAGAAGATCGCAGAGATGGG
CAATAGTGATTCCGACCGCGTGATGCTGCATTTCGAGGTTCGCCGGCAGGGTAAACCTGTCGATCCGCTGAAGTATTTGC
CGCCTCAATAA

Upstream 100 bases:

>100_bases
CGCTCGTGGAGCGCGTCGCACCCGCGCAGTGGCGCGAGTCGCGGCTTGATCGCGTTTTCTTTGTCCCTTTAAAATCCGGA
GTGATTTGATACCGATGAGT

Downstream 100 bases:

>100_bases
ACGAGACGACCATGCCGAAATCGAAGCGCCACGATCCGCAAGCCGAGTCTGAGAAGATCAGTCGAGCCAAGCAAGCATCG
GTAGAGCGAACTGGTGCTTC

Product: M23 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDRSGSLGTTAATQPPAPLPPAPPGYYRVKPGDTLYRIA
LENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAP
AASASSEPSAPAANGNVSFAWPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYL
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_296_residues
MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDRSGSLGTTAATQPPAPLPPAPPGYYRVKPGDTLYRIA
LENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAP
AASASSEPSAPAANGNVSFAWPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYL
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_296_residues
MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDRSGSLGTTAATQPPAPLPPAPPGYYRVKPGDTLYRIA
LENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAP
AASASSEPSAPAANGNVSFAWPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYL
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=39.6887159533074, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI87082174, Length=231, Percent_Identity=40.6926406926407, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=39.4957983193277, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30490; Mature: 30490

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDRSGSLGTTAATQPPAPL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PPAPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAA
CCCCCCCEEECCCCEEEEEEECCCCCEEHHHHHCCCCCCCEECHHHHEEECCCCCCCCCC
APAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAPAASASSEPSAPAANGNVSFA
CCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
WPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYL
CCCCCHHHHCCCCCCCCCEECCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEE
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
EEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDRSGSLGTTAATQPPAPL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PPAPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAA
CCCCCCCEEECCCCEEEEEEECCCCCEEHHHHHCCCCCCCEECHHHHEEECCCCCCCCCC
APAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAPAASASSEPSAPAANGNVSFA
CCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
WPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYL
CCCCCHHHHCCCCCCCCCEECCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEE
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
EEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]