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The map label for this gene is potD [C]

Identifier: 126454396

GI number: 126454396

Start: 1392238

End: 1393299

Strand: Reverse

Name: potD [C]

Synonym: BURPS1106A_1419

Alternate gene names: 126454396

Gene position: 1393299-1392238 (Counterclockwise)

Preceding gene: 126455315

Following gene: 126451483

Centisome position: 34.93

GC content: 67.04

Gene sequence:

>1062_bases
GTGACCGTCCGCCGTTCGCTTCTTCCGCGCTCGCCGCTCGCCGCCGTGCGTCGCGCGTGCGCCGCCATGCTGATCCCCGT
CGCGTCGCTCGCGCTGTCGCTCGGCGCATCCGCCGCGCACGCGCAAGACACCGCGATCTGCTACAACTGCCCGCCCGAAT
GGGCCGACTGGGCCGCGCAGATCGCCGCGATCAAGCAGCGGACCGGCATTCGCGTGCCGTTCGACAACAAGAACTCGGGC
CAGGCGATCGCGCAACTGATCGCCGAGCAGAAGAGCCCCGTCGCGGACGTCGTCTATCTCGGCGTGTCCTCGGCGTTCCA
GGCGAAGGACAAGGGCGTCGTCGCCCCCTACAAGCCCGCGCACTGGAGCGACATCCCGGCGAATCTCAAGGACCCGCAAG
GCTACTGGTTCGCGATCCACTCCGGCACGCTCGGCTTCTTCGTCAACAAGGACGCGCTCGACGGCAAGCCGGTGCCGCGC
ACGTGGGCCGATCTGCTCAAGCCCGAGTACAAGGGGATGGTCGGCTATCTCGATCCGTCGAGCGCGTTCGTCGGCTATGC
GGGCGCCGTCGCGGTGAACCAGGCGCTCGGCGGCAGCTTCGACGATTTCCGCCCGGCGCTCGACTGGTTCCGCAAGCTGA
AGGCGAACCAGCCGATCGTGCCGAAGCAGACCGCATACGCGCGCGTGCTGTCCGGCGAGATTCCGATCCTGCTCGATTAC
GATTTCGACGCCTATCGCGCGAAGTACAAGGATCATGCGAACGTCGAATTCGTGATTCCGAAGGAAGGCACGATCTCGGT
GCCGTACGTGATGAGCCTCGTGAAGGGCGCGCCGCACGAGGCGAACGGCAGGAAGGTGCTCGATTTCGTGCTGTCCGACG
AAGGCCAGAAGCTGTGGGCGAGCGCGTATCTGCGGCCGGTGCGCGCGCAGGCGCTCGGCGCCGACGTCGCCGCGCAGTTC
CTGCCGGCGAGCGAGTACGCGCGCGCGAAGAGCGTCGACTTCGGCAAGCTTGCGGCCGGCCAGCAGGCGTTCGGCAAGCA
GTATCTGCAAGCGATGCAATAA

Upstream 100 bases:

>100_bases
ACGGCGCGACCGTCGCGCCGCCGCGCGATGCGCGCATCGCCTGAACCGTGCTTTCGCTTTCCGTCGCTTTCCATTCGCTT
CGCCCTCGAGGAGACCTGCC

Downstream 100 bases:

>100_bases
CCGCCGCGGCAAGCGGGGCGACAGGCGGCCGTTCGTCGTTCGTCGTTCGCCGTTCGCCGTTCGTCGCCCATCATCCATCA
CCCGTCACCCGCAAGAGCCG

Product: ABC transporter, periplasmic substrate-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTVRRSLLPRSPLAAVRRACAAMLIPVASLALSLGASAAHAQDTAICYNCPPEWADWAAQIAAIKQRTGIRVPFDNKNSG
QAIAQLIAEQKSPVADVVYLGVSSAFQAKDKGVVAPYKPAHWSDIPANLKDPQGYWFAIHSGTLGFFVNKDALDGKPVPR
TWADLLKPEYKGMVGYLDPSSAFVGYAGAVAVNQALGGSFDDFRPALDWFRKLKANQPIVPKQTAYARVLSGEIPILLDY
DFDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGRKVLDFVLSDEGQKLWASAYLRPVRAQALGADVAAQF
LPASEYARAKSVDFGKLAAGQQAFGKQYLQAMQ

Sequences:

>Translated_353_residues
MTVRRSLLPRSPLAAVRRACAAMLIPVASLALSLGASAAHAQDTAICYNCPPEWADWAAQIAAIKQRTGIRVPFDNKNSG
QAIAQLIAEQKSPVADVVYLGVSSAFQAKDKGVVAPYKPAHWSDIPANLKDPQGYWFAIHSGTLGFFVNKDALDGKPVPR
TWADLLKPEYKGMVGYLDPSSAFVGYAGAVAVNQALGGSFDDFRPALDWFRKLKANQPIVPKQTAYARVLSGEIPILLDY
DFDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGRKVLDFVLSDEGQKLWASAYLRPVRAQALGADVAAQF
LPASEYARAKSVDFGKLAAGQQAFGKQYLQAMQ
>Mature_352_residues
TVRRSLLPRSPLAAVRRACAAMLIPVASLALSLGASAAHAQDTAICYNCPPEWADWAAQIAAIKQRTGIRVPFDNKNSGQ
AIAQLIAEQKSPVADVVYLGVSSAFQAKDKGVVAPYKPAHWSDIPANLKDPQGYWFAIHSGTLGFFVNKDALDGKPVPRT
WADLLKPEYKGMVGYLDPSSAFVGYAGAVAVNQALGGSFDDFRPALDWFRKLKANQPIVPKQTAYARVLSGEIPILLDYD
FDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGRKVLDFVLSDEGQKLWASAYLRPVRAQALGADVAAQFL
PASEYARAKSVDFGKLAAGQQAFGKQYLQAMQ

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 38273; Mature: 38142

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRRSLLPRSPLAAVRRACAAMLIPVASLALSLGASAAHAQDTAICYNCPPEWADWAAQ
CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHH
IAAIKQRTGIRVPFDNKNSGQAIAQLIAEQKSPVADVVYLGVSSAFQAKDKGVVAPYKPA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEECCCCHHHHHCCCCCCCCCCCC
HWSDIPANLKDPQGYWFAIHSGTLGFFVNKDALDGKPVPRTWADLLKPEYKGMVGYLDPS
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCHHHCCEEEEECCC
SAFVGYAGAVAVNQALGGSFDDFRPALDWFRKLKANQPIVPKQTAYARVLSGEIPILLDY
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEC
DFDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGRKVLDFVLSDEGQKLWA
CCHHHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHH
SAYLRPVRAQALGADVAAQFLPASEYARAKSVDFGKLAAGQQAFGKQYLQAMQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TVRRSLLPRSPLAAVRRACAAMLIPVASLALSLGASAAHAQDTAICYNCPPEWADWAAQ
CCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHH
IAAIKQRTGIRVPFDNKNSGQAIAQLIAEQKSPVADVVYLGVSSAFQAKDKGVVAPYKPA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEECCCCHHHHHCCCCCCCCCCCC
HWSDIPANLKDPQGYWFAIHSGTLGFFVNKDALDGKPVPRTWADLLKPEYKGMVGYLDPS
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCHHHCCEEEEECCC
SAFVGYAGAVAVNQALGGSFDDFRPALDWFRKLKANQPIVPKQTAYARVLSGEIPILLDY
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEC
DFDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGRKVLDFVLSDEGQKLWA
CCHHHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHH
SAYLRPVRAQALGADVAAQFLPASEYARAKSVDFGKLAAGQQAFGKQYLQAMQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]