Click here to switch to the map view.

The map label for this gene is yobA [H]

Identifier: 126454378

GI number: 126454378

Start: 980703

End: 981074

Strand: Direct

Name: yobA [H]

Synonym: BURPS1106A_1001

Alternate gene names: 126454378

Gene position: 980703-981074 (Clockwise)

Preceding gene: 126452148

Following gene: 126451500

Centisome position: 24.59

GC content: 70.16

Gene sequence:

>372_bases
ATGACCATGACGATCACTTCCCTCGCGCGGCGCGGCCTTGCCGCCGCGCTCGCACTCGCGCTGTCGAGCGCCGCGTTCGC
GCACGCGAAACCCGAAAAGAGCGATCCGCCCGCGAATGCCGCGGTGGCCGCGCCGCAGGCCGTGTCGATCGACTTCACCG
AGACGCTCGAGCCGGCGTTCAGCTCGATCGTCGTCGTCGACGCAGCGGGCGCGCCGGCGCAGGCCGCGAAGGCGGTCGTC
GACGCGAGCGATCGCAAGCGCATGTCGGTCGCGCTCAAGCCGCTGCAAGCCGGCGTGTATACGGTCAAGTGGGTGGCGCT
CGCCACCGACGGCCACCGCACGCAGGGCCGCTATACGTTCACCGTGAAATAG

Upstream 100 bases:

>100_bases
AAGCGGCGCGCCCGAGCGCAGGCGCGCGCGGGCTGTTAAGCTCGGGGCCCCGCGGTCGTGCTCTCGCGACCGCTCATTGC
CCGTTCGGAAGAAAGCCACG

Downstream 100 bases:

>100_bases
GCGCGACGCGCTCAGCGCAGCCGCGTGACGAACGCGCGCGCGCCGAGCGCCGATGCCTCGCCGCGTTCGCCGGCGGCGCG
CGGGCCGATGCGTATGCGCT

Product: putative copper resistance protein CopC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MTMTITSLARRGLAAALALALSSAAFAHAKPEKSDPPANAAVAAPQAVSIDFTETLEPAFSSIVVVDAAGAPAQAAKAVV
DASDRKRMSVALKPLQAGVYTVKWVALATDGHRTQGRYTFTVK

Sequences:

>Translated_123_residues
MTMTITSLARRGLAAALALALSSAAFAHAKPEKSDPPANAAVAAPQAVSIDFTETLEPAFSSIVVVDAAGAPAQAAKAVV
DASDRKRMSVALKPLQAGVYTVKWVALATDGHRTQGRYTFTVK
>Mature_122_residues
TMTITSLARRGLAAALALALSSAAFAHAKPEKSDPPANAAVAAPQAVSIDFTETLEPAFSSIVVVDAAGAPAQAAKAVVD
ASDRKRMSVALKPLQAGVYTVKWVALATDGHRTQGRYTFTVK

Specific function: Unknown

COG id: COG2372

COG function: function code R; Uncharacterized protein, homolog of Cu resistance protein CopC

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopC family [H]

Homologues:

Organism=Escherichia coli, GI1788146, Length=119, Percent_Identity=37.8151260504202, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC [H]

EC number: NA

Molecular weight: Translated: 12695; Mature: 12563

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMTITSLARRGLAAALALALSSAAFAHAKPEKSDPPANAAVAAPQAVSIDFTETLEPAF
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECHHHHHHHHH
SSIVVVDAAGAPAQAAKAVVDASDRKRMSVALKPLQAGVYTVKWVALATDGHRTQGRYTF
CEEEEEECCCCCHHHHHHHHCCCCCCCHHEEECHHHCCEEEEEEEEEECCCCCCCCEEEE
TVK
EEC
>Mature Secondary Structure 
TMTITSLARRGLAAALALALSSAAFAHAKPEKSDPPANAAVAAPQAVSIDFTETLEPAF
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECHHHHHHHHH
SSIVVVDAAGAPAQAAKAVVDASDRKRMSVALKPLQAGVYTVKWVALATDGHRTQGRYTF
CEEEEEECCCCCHHHHHHHHCCCCCCCHHEEECHHHCCEEEEEEEEEECCCCCCCCEEEE
TVK
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]