Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 126454265

GI number: 126454265

Start: 2311429

End: 2312994

Strand: Direct

Name: ydiU [C]

Synonym: BURPS1106A_2336

Alternate gene names: 126454265

Gene position: 2311429-2312994 (Clockwise)

Preceding gene: 126452089

Following gene: 126455298

Centisome position: 57.95

GC content: 70.69

Gene sequence:

>1566_bases
ATGTCGTTTTCCAGAAGCGAGGCCGCACCGGCCGCCCCTCTCCCCGATCTCGCCGCGACGCTCGCCGCGCCGCGCGACGA
TGCGTTCCAGCAACTCGGCGCCGCGTTCGTCACGCGGCTGCCCGCCGCGCCGCTGCCCGCGCCGTACGTCGTCGGCTTCT
CCGACGACGCGGCGCGCATGCTCGGCCTCGAGCCCGCGCTGCGCGACGCGCCCGGCTTCGCCGAGCTGTTCTGCGGCAAC
CCGACGCGCGACTGGCCGCAGGCGTCGCTGCCGTACGCGTCGGTCTATTCGGGCCACCAGTTCGGCGTGTGGGCGGGCCA
GCTCGGCGACGGGCGCGCGCTCACCATCGGCGAACTCGCGCACGACGGCCGCCGCTACGAGCTGCAGTTAAAGGGCGCGG
GACGCACGCCGTATTCGCGCATGGGCGACGGCCGCGCGGTGCTGCGCTCGTCGATCCGCGAGTTCCTCTGCTCGGAGGCG
ATGCACCATCTCGGCATACCGACGACGCGCGCGCTCGCCGTGATCGGCTCCGACCAGCCGGTGGTCCGCGAGGAAATCGA
GACGTCGGCGGTCGTCACGCGCGTCGCGCAGAGCTTCGTGCGCTTCGGCCATTTCGAGCACTTCTTCGCGAACGATCGGC
CCGAGCAGTTGCGCGCGCTCGCCGATCACGTGATCGAGCGTTTCTATCCGGCCTGCCGCGACGCCGACGATCCGTATCTC
GCGCTGCTCGCGGAAGCGACGCGGCGCACCGCGGAGCTCGTCGCGCAATGGCAGGCGGTCGGCTTCTGCCACGGCGTGAT
GAACACCGACAACATGTCGATCCTCGGCCTGACGATCGACTACGGCCCGTTCGGCTTCATCGACGCGTTCGACGCGAAGC
ACGTGTGCAACCATTCGGACACGCAGGGCCGCTACGCCTACCGGATGCAGCCGCGCATCGCGCACTGGAACTGCTTCTGC
CTCGCGCAGGCGCTGCTGCCGCTCATCGGCCTGCACCGCGACGCGCCGAGCGAAGACGCGCGCGCCGAGCGCGCGGTCGA
GGACGCGCACGCGGTGCTCGGCCGCTTTCCCGAGCAATTCGGCCCCGCGCTCGAGCGCGCGATGCGCGCGAAGCTCGGCC
TCGCGCTCGAACGCGAGGGCGACGCGGCGCTCGCGAACCAGTTGCTCGAGATCATGGATGCGAGCCATGCCGATTTCACG
CTGACGTTTCGCCATCTCGCGCGCGTGTCGAAGCACGACGCGCGCGGCGACGCGCCCGTGCGGGATCTGTTCATCGATCG
CGACGCGTTCGATCGCTGGGCGAACCTCTATCGCGCGCGCCTGTCGGAAGAAGCGCGCGACGACGCGTCGCGCGCGGCCG
CGATGAACCGCGTGAACCCGAAATACGTGCTGCGCAACCACCTCGCGGAAACGGCGATCCGCCGCGCGAAGGAGAAGGAT
TTTTCGGAGGTCGAGCGCCTCGCGGCCGTGCTGCGGCGCCCGTTCGACGAGCAGCTGGAGCACGACGCGTATGCGGCGCT
GCCGCCCGACTGGGCGAGCACGCTCGAGGTGAGCTGCTCGTCGTGA

Upstream 100 bases:

>100_bases
CCGATACGGTCTGCTGCAAACGGCTCGGCGGCGCGCGGACGGCTTCGAGCGCCCCGCGCGGCGCGGACTTACAATATCGG
CTAACTCAATGGGCAGCAAT

Downstream 100 bases:

>100_bases
CGCCGCCGGCACGCCGCGCGTTGCGCATGAATTCATCAGGAGAATCGAAGATGTCAGGAGATCGAGACGACCCGCGTTAT
CCCTACCCGAAGGACGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGN
PTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEA
MHHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADDPYL
ALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHWNCFC
LAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFT
LTFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKD
FSEVERLAAVLRRPFDEQLEHDAYAALPPDWASTLEVSCSS

Sequences:

>Translated_521_residues
MSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGN
PTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEA
MHHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADDPYL
ALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHWNCFC
LAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFT
LTFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKD
FSEVERLAAVLRRPFDEQLEHDAYAALPPDWASTLEVSCSS
>Mature_520_residues
SFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNP
TRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAM
HHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADDPYLA
LLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHWNCFCL
AQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTL
TFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKDF
SEVERLAAVLRRPFDEQLEHDAYAALPPDWASTLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=489, Percent_Identity=43.1492842535787, Blast_Score=308, Evalue=7e-84,
Organism=Escherichia coli, GI1787999, Length=432, Percent_Identity=50.9259259259259, Blast_Score=421, Evalue=1e-119,
Organism=Saccharomyces cerevisiae, GI6325034, Length=396, Percent_Identity=33.8383838383838, Blast_Score=198, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 57677; Mature: 57545

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARM
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
LGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELA
HCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEHHHHH
HDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQP
CCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCC
VVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADDPYL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
ALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCC
TQGRYAYRMQPRIAHWNCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQF
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
GPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGDAPV
CHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH
RDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
FSEVERLAAVLRRPFDEQLEHDAYAALPPDWASTLEVSCSS
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHEEEECCC
>Mature Secondary Structure 
SFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARM
CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
LGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELA
HCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEHHHHH
HDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQP
CCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCC
VVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADDPYL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
ALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCC
TQGRYAYRMQPRIAHWNCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQF
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
GPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARGDAPV
CHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH
RDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAKEKD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
FSEVERLAAVLRRPFDEQLEHDAYAALPPDWASTLEVSCSS
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA