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The map label for this gene is gbpA [H]

Identifier: 126454236

GI number: 126454236

Start: 3880669

End: 3881313

Strand: Reverse

Name: gbpA [H]

Synonym: BURPS1106A_3979

Alternate gene names: 126454236

Gene position: 3881313-3880669 (Counterclockwise)

Preceding gene: 126455281

Following gene: 126453143

Centisome position: 97.31

GC content: 62.33

Gene sequence:

>645_bases
ATGAGCACTACCGATTCGAGAAGCGCAACGAAGTCTTCGTCCATTTCTCCGCGGCATGGCCGCGTCATCACGCCCGAGTC
GCGCGCCGTGTATCTCTACGAAGCAGGAAGGCTCGATTTCGGGCAGGTCAATGAGCTGGAGGGCGGCAAATTCTTTCCCG
CGACCCAAAGCGGGCTCAGAGATCCGGACGCGCCGGACGACGTCGCCAACGGCATGCCGCCGCGCGACGGCGAAATCGCG
AGCGGCGGGCGCACGGCGGATGCCCGCGCGCAACTCAACGAACCCGATTCCGTTGCGCATTGGCAGAAACATGCGGTGCG
ATCGGGGCAATCGCTGCAAATCTCGTGGTCGTATTCGATGCCGCACAAGACGCGGCGCTGGACTTACTGGATCACGAAGC
CGGGATGGGACACCCAGGCGCGGCTTGCGCGCGCGCATTTCGAGCCCGATCCGCTGAAGGTCTACCTGAACACGTATCAG
CCGTACTGGGGGCCGGATGCGGACAAGGAGTTGATCCCCCAGGGCGAGACGATTCATGAATTCAACCTGCCGACTCGCAC
CGGCTATCACGTACTGCTCGCGGTGTGGGACGTCGCCGATACCGCCAACGCGTTCTATCAGGTGATCGATCTGAATTTCG
CGTGA

Upstream 100 bases:

>100_bases
CATCTCCACCAAGCACCTAGCATTAATTTCACTGGTATCGCGAATGGCTTCCAGCGTTGGTCTTGCCGATGTCCGGCACG
TTTGCAGCCAAGGAGGCGAA

Downstream 100 bases:

>100_bases
GCCGGCTGGTCATTTCCGCGTGTCGTCGCGGTCTGCGGCACGGATAAGGCATTGCGGCCATCGGATTCGCGCTCGTTCGA
TGGCCGTCTCGCACCGCGAT

Product: chitin-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSTTDSRSATKSSSISPRHGRVITPESRAVYLYEAGRLDFGQVNELEGGKFFPATQSGLRDPDAPDDVANGMPPRDGEIA
SGGRTADARAQLNEPDSVAHWQKHAVRSGQSLQISWSYSMPHKTRRWTYWITKPGWDTQARLARAHFEPDPLKVYLNTYQ
PYWGPDADKELIPQGETIHEFNLPTRTGYHVLLAVWDVADTANAFYQVIDLNFA

Sequences:

>Translated_214_residues
MSTTDSRSATKSSSISPRHGRVITPESRAVYLYEAGRLDFGQVNELEGGKFFPATQSGLRDPDAPDDVANGMPPRDGEIA
SGGRTADARAQLNEPDSVAHWQKHAVRSGQSLQISWSYSMPHKTRRWTYWITKPGWDTQARLARAHFEPDPLKVYLNTYQ
PYWGPDADKELIPQGETIHEFNLPTRTGYHVLLAVWDVADTANAFYQVIDLNFA
>Mature_213_residues
STTDSRSATKSSSISPRHGRVITPESRAVYLYEAGRLDFGQVNELEGGKFFPATQSGLRDPDAPDDVANGMPPRDGEIAS
GGRTADARAQLNEPDSVAHWQKHAVRSGQSLQISWSYSMPHKTRRWTYWITKPGWDTQARLARAHFEPDPLKVYLNTYQP
YWGPDADKELIPQGETIHEFNLPTRTGYHVLLAVWDVADTANAFYQVIDLNFA

Specific function: Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin [H]

COG id: COG3397

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 chitin-binding type-4 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004302
- InterPro:   IPR020879
- InterPro:   IPR014756 [H]

Pfam domain/function: PF03067 Chitin_bind_3 [H]

EC number: NA

Molecular weight: Translated: 24019; Mature: 23888

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTDSRSATKSSSISPRHGRVITPESRAVYLYEAGRLDFGQVNELEGGKFFPATQSGLR
CCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCC
DPDAPDDVANGMPPRDGEIASGGRTADARAQLNEPDSVAHWQKHAVRSGQSLQISWSYSM
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
PHKTRRWTYWITKPGWDTQARLARAHFEPDPLKVYLNTYQPYWGPDADKELIPQGETIHE
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCEEEE
FNLPTRTGYHVLLAVWDVADTANAFYQVIDLNFA
ECCCCCCCCEEEEEEECHHHHHHHEEEEEEECCC
>Mature Secondary Structure 
STTDSRSATKSSSISPRHGRVITPESRAVYLYEAGRLDFGQVNELEGGKFFPATQSGLR
CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCC
DPDAPDDVANGMPPRDGEIASGGRTADARAQLNEPDSVAHWQKHAVRSGQSLQISWSYSM
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
PHKTRRWTYWITKPGWDTQARLARAHFEPDPLKVYLNTYQPYWGPDADKELIPQGETIHE
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCEEEE
FNLPTRTGYHVLLAVWDVADTANAFYQVIDLNFA
ECCCCCCCCEEEEEEECHHHHHHHEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]