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The map label for this gene is gspD [H]

Identifier: 126454161

GI number: 126454161

Start: 8395

End: 10668

Strand: Direct

Name: gspD [H]

Synonym: BURPS1106A_0007

Alternate gene names: 126454161

Gene position: 8395-10668 (Clockwise)

Preceding gene: 126453925

Following gene: 126454977

Centisome position: 0.21

GC content: 66.8

Gene sequence:

>2274_bases
ATGACAAGAACTCGCTTTGCTTTGCGGCGCGTCGCAACGGCGCTCGTCGTCGCCGGAATTGTCGCCGCGCAGGCCGCTCA
CGCTCAGGTCACGCTCAATTTCGTCAATGCGGACATCGATCAGGTCGCCAAGGCGATCGGCGCCGCGACGGGCAAGACGA
TCATCGTCGATCCTCGCGTCAAGGGGCAGCTGAACCTCGTCGCCGAGCGTCCGGTGCCCGAAGATCAGGCGCTGAAGACG
CTGCAGTCCGCGCTGCGGATGCAGGGCTTCGCGCTCGTCCAGGATCACGGCGTCCTGAAGGTCGTGCCGGAAGCCGACGC
GAAGCTGCAGGGCGTGCCGACCTACATCGGCAACGCGCCGCAGGCGCGCGGCGACCAGGTGGTCACGCAAGTGTTCGAGC
TGCGCAACGAATCGGCGAACAACTTGCTTCCGGTGCTGCGCCCGCTGATCTCGCCGAACAACACGATCACCGCGTATCCG
GCCAACAACACGATCGTCGTCACCGATTACGCGGACAACGTGCGCCGGATCGCGCAGATCATCGCGGGCGTCGACAGCGC
GGCGGGCTCGCAAGTCGCCGTCGTGCCGCTCAAGAACGCGAATGCGATCGACATCGCCGCGCAACTGACGAAGCTGCTCG
ACCCGGGCGCGATCGGCAACACCGACGCGACGCTGAAAGTCACCGTGCAGGCCGATCCGCGAACCAATGCGCTGCTGCTG
CGCGCATCGAACGCGCAGCGCCTCGCCGCGGCGAAGAAGATCGCGCAGCAGCTCGACGCGCCGAGCGGTGTGCCGGGCAA
CATGCACGTCGTGCCGCTGCGCAATGCGGAAGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCG
GCGAAAGCGGCTCGTCGGCGAGCTCGAACGACGCGAACGCGTTCAATCAGGGCGGCTCGCAAAGCGGCTCGAACTTCTCG
ACGGGCGCATCGGGCACGCCGCCGCTGCCGTCGGGGCTGTCGTCGAATTCATCGGGCGGCGCGGGCGGCACGACGGGCGG
CGGCGGGCTCGGCAATGCGGGGCTGCTCGGCGGCGACAAGGACAAGGGCGACGACAACCAGCCGGGCGGAATGATCCAGG
CGGACGCGGCGTCGAATTCGCTCATCATCACCGCGTCGGATCCGGTATACCGGAATCTGCGGGCCGTGATCGACCAGCTC
GATGCGCGGCGCGCGCAGGTGTACATCGAGGCGCTGGTCGTCGAGCTGCAGGCGACGACCAGCGCCAATCTGGGCATTCA
ATGGCAGGTTGCGAACAACGCGCTCTATGCGGGCACCAATCTGGTGACGGGGCAGACCGGCCTCGGCAACAGCATCGTCA
ATCTGACGGCGGGAGCCGTGACCAATCCGGGCGGCACGCTGGGGTCGCTGGGCTCGATCACGAACGGCCTGAACATCGGT
TGGTTGCACAACATGTTCGGCGTGCAGGGTTTGGGCGCCTTGCTGCAGTTCTTCGCGGGCTCGAGCGACGCAAACGTGCT
GTCGACGCCGAACCTCGTCACGCTGGACAATGAGGAGGCGAAGATCGTGGTCGGCCAGAACGTGCCGATTCCGACGGGCT
CGTACTCGAACCTGACGAGCGGCACGACCGCCAACGCGTTCAACACATACGACCGGCGCGATGTCGGCCTGACGCTGCAC
GTGAAGCCGCAAATCACCGAGGGCGGCATTCTGAAGCTGCAGCTGTACACGGAAGATTCCGCGGTGGTGCCCGGCACGAA
CACGACGTCGGCCAATTCGCCCGGGCCGACGTTCACGAAGCGCTCGATCCAGTCGACGGTGCTGGCGGACAACGGCGAGA
TCATCGTGCTCGGCGGGTTGATGCAGGATAACTACCAGGTATCGAATACGAAGGTGCCGCTCCTCGGCGACATTCCGTGG
ATCGGCCAGCTGTTCCGCTCCGAGGGCAAGACGCGCCAGAAGACGAACCTGATGGTGTTCCTGCGCCCCGTGATCATCAA
CGACCGCGAGACTGCGCAGGCGGTGACCTCGAACCGCTACGACTACATCCAGGGCGTGACGGGCGCGTACAAGTCGGACA
ACAACGTCATTCGCGACAAGGACGACCCGATCGTCCCGCCGATGCCGCTCGGCCCGAGCCAGGGCGGCTCGCCCGCGATG
AACCTGTTCGACCTCGACAAGATGCGGCGCCAGCAGCTCGCTCCGCCCGCGCCCGCCAGCGCGCCGGCGGCGGCGAGCGA
CGCCGGCACCGCGTCGCCGGGAGCCCGTCCGTGA

Upstream 100 bases:

>100_bases
GATATTTCGGACATGAAAAACTGCTAATGTCTGTTTTTTTGATCCTGACCTTACGTAATACCATCGGAAACGGCCGCCGC
CGGCATCGATCCATTACTCC

Downstream 100 bases:

>100_bases
CGCAGGCGCTCGCGCAAGGCGCCCCGGATCAGCCGGCCGCCGGCGCGCCGTCGCCGATCGCCGCGCGGCTGTTGCCGTAC
GGCTTCGCGAAGGCCGGCCA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: Pectic enzymes secretion protein outD [H]

Number of amino acids: Translated: 757; Mature: 756

Protein sequence:

>757_residues
MTRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKT
LQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYP
ANNTIVVTDYADNVRRIAQIIAGVDSAAGSQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLL
RASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFS
TGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQL
DARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIG
WLHNMFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLH
VKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPW
IGQLFRSEGKTRQKTNLMVFLRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDKDDPIVPPMPLGPSQGGSPAM
NLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP

Sequences:

>Translated_757_residues
MTRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKT
LQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYP
ANNTIVVTDYADNVRRIAQIIAGVDSAAGSQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLL
RASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFS
TGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQL
DARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIG
WLHNMFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLH
VKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPW
IGQLFRSEGKTRQKTNLMVFLRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDKDDPIVPPMPLGPSQGGSPAM
NLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP
>Mature_756_residues
TRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTL
QSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPA
NNTIVVTDYADNVRRIAQIIAGVDSAAGSQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLR
ASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFST
GASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQLD
ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGW
LHNMFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHV
KPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWI
GQLFRSEGKTRQKTNLMVFLRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDKDDPIVPPMPLGPSQGGSPAMN
LFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=512, Percent_Identity=33.984375, Blast_Score=210, Evalue=3e-55,
Organism=Escherichia coli, GI1789793, Length=299, Percent_Identity=27.4247491638796, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 78326; Mature: 78195

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRV
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCC
KGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNAP
CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCC
QARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIAQI
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHH
IAGVDSAAGSQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLL
HHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
RASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSA
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
SSNDANAFNQGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDK
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATT
CCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECC
SANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIG
CCCCCEEEEECCCEEEECCEEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCH
WLHNMFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTS
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCC
GTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTK
CCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCHHH
RSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVF
HHHHHEEEECCCCEEEEECEECCCEEECCCCCCEEECCHHHHHHHHHCCCCCHHCCEEEE
LRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDKDDPIVPPMPLGPSQGGSPAM
EEEEEECCCHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
NLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRV
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCC
KGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNAP
CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCC
QARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIAQI
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHH
IAGVDSAAGSQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLL
HHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
RASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSA
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
SSNDANAFNQGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDK
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATT
CCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECC
SANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIG
CCCCCEEEEECCCEEEECCEEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCH
WLHNMFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTS
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCC
GTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTK
CCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCHHH
RSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVF
HHHHHEEEECCCCEEEEECEECCCEEECCCCCCEEECCHHHHHHHHHCCCCCHHCCEEEE
LRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDKDDPIVPPMPLGPSQGGSPAM
EEEEEECCCHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
NLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8326859 [H]