Click here to switch to the map view.

The map label for this gene is yhbU [H]

Identifier: 126454060

GI number: 126454060

Start: 2714243

End: 2715277

Strand: Reverse

Name: yhbU [H]

Synonym: BURPS1106A_2749

Alternate gene names: 126454060

Gene position: 2715277-2714243 (Counterclockwise)

Preceding gene: 126455188

Following gene: 126453416

Centisome position: 68.08

GC content: 68.7

Gene sequence:

>1035_bases
ATGACGCAAAGCAGCCACTTCGCGACGGGCGCCGCGCCGATCGAACTCGTGTGCCCGGCGGGCAGCCTGCCCGCGCTGAA
GGCCGCGGTCGACAACGGCGCGGACTGCGTGTATCTCGGTTTTCGCGACGCGACGAACGCGCGCAACTTCGCCGGCCTGA
ACTTCGACGCGCAGGCGATCGCGGCCGGCATCCGCTATGCGCGCGAGCGCGGCCGCAAGGTGCTCGTCGCGCTCAACACG
TATCCGCAGCCGGACGGCTGGGCCGCGTGGCGGGAGGCGGTGGGCCGCGCGGCCGACGCGGGCGTGGACGCGATCATCGT
CGCCGATCCGGGGCTCATGCGCTTCGCGCGCGAGCGCTACCCGGAGCTGCGACTGCACCTGTCGGTGCAGGGCTCGGCGA
CGAACTACGAGGCGATCAACTTCTATCACGAGCACTTCGGCGTTTCGCGCGCGGTGCTGCCGCGCGTGCTGTCGCTCGCG
CAGGTCGAACAGGTGGCCGAGAACACGCCGGTCGAAATCGAGGTGTTCGGCTTCGGCAGTCTGTGCGTGATGGTCGAGGG
GCGCTGCGCGCTGTCGTCGTATGCAACGGGCGAATCGCCGAACACGCGCGGCGTGTGCTCGCCCGCGAAGGCGGTGCGCT
GGCAGAAGACGCCGGACGGCCTCGAATCGCGGCTGAACGGCGTGCTGATCGACCGCTACGAAGACGGCGAGAACGCCGGC
TATCCGACGCTCTGCAAGGGGCGCTTCACGGTGGCCGACGAGAGCTACTACGCGATCGAGGAACCGACGAGCCTGAACAC
GCTCGAGCTGCTGCCGAAGCTGATGCAGATCGGCATACGCGCGATCAAGATCGAAGGCCGTCAGCGCAGCCCCGCGTACG
TCGCGCAGGTGACGCGCGTGTGGCGCGATGCGATCGACCAGTGCACGGCGAACCTCGCGCGCTACTACGTGAAGCCCGCG
TGGATGACGGAACTGAACAAGGTCGCGGAAGGGCAGCAGCATACGCTCGGCGCCTACCACCGGCCGTGGAAATGA

Upstream 100 bases:

>100_bases
GCGCTGGGCTGACGGCGCCCGCGCCGGGCGCCCGCCCGTTCCCGCCGCTCGCCGGCCTGCCGCGAGCGGTTTCTCGTTTC
TTTGATGGAGCCGTCATGCC

Downstream 100 bases:

>100_bases
CACGCACGACGGCGCACGCCGGCATGCGGGAGCGAGGATCATGAAAATTGCTTTGGGGCCGGTACAGTACTACTGGCCGC
GCGTCGCGACGATGCAGTTC

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTQSSHFATGAAPIELVCPAGSLPALKAAVDNGADCVYLGFRDATNARNFAGLNFDAQAIAAGIRYARERGRKVLVALNT
YPQPDGWAAWREAVGRAADAGVDAIIVADPGLMRFARERYPELRLHLSVQGSATNYEAINFYHEHFGVSRAVLPRVLSLA
QVEQVAENTPVEIEVFGFGSLCVMVEGRCALSSYATGESPNTRGVCSPAKAVRWQKTPDGLESRLNGVLIDRYEDGENAG
YPTLCKGRFTVADESYYAIEEPTSLNTLELLPKLMQIGIRAIKIEGRQRSPAYVAQVTRVWRDAIDQCTANLARYYVKPA
WMTELNKVAEGQQHTLGAYHRPWK

Sequences:

>Translated_344_residues
MTQSSHFATGAAPIELVCPAGSLPALKAAVDNGADCVYLGFRDATNARNFAGLNFDAQAIAAGIRYARERGRKVLVALNT
YPQPDGWAAWREAVGRAADAGVDAIIVADPGLMRFARERYPELRLHLSVQGSATNYEAINFYHEHFGVSRAVLPRVLSLA
QVEQVAENTPVEIEVFGFGSLCVMVEGRCALSSYATGESPNTRGVCSPAKAVRWQKTPDGLESRLNGVLIDRYEDGENAG
YPTLCKGRFTVADESYYAIEEPTSLNTLELLPKLMQIGIRAIKIEGRQRSPAYVAQVTRVWRDAIDQCTANLARYYVKPA
WMTELNKVAEGQQHTLGAYHRPWK
>Mature_343_residues
TQSSHFATGAAPIELVCPAGSLPALKAAVDNGADCVYLGFRDATNARNFAGLNFDAQAIAAGIRYARERGRKVLVALNTY
PQPDGWAAWREAVGRAADAGVDAIIVADPGLMRFARERYPELRLHLSVQGSATNYEAINFYHEHFGVSRAVLPRVLSLAQ
VEQVAENTPVEIEVFGFGSLCVMVEGRCALSSYATGESPNTRGVCSPAKAVRWQKTPDGLESRLNGVLIDRYEDGENAGY
PTLCKGRFTVADESYYAIEEPTSLNTLELLPKLMQIGIRAIKIEGRQRSPAYVAQVTRVWRDAIDQCTANLARYYVKPAW
MTELNKVAEGQQHTLGAYHRPWK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=62.8398791540785, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1788397, Length=343, Percent_Identity=32.6530612244898, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081910, Length=320, Percent_Identity=30.3125, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37769; Mature: 37638

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSSHFATGAAPIELVCPAGSLPALKAAVDNGADCVYLGFRDATNARNFAGLNFDAQAI
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AAGIRYARERGRKVLVALNTYPQPDGWAAWREAVGRAADAGVDAIIVADPGLMRFARERY
HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCHHCCCCCEEEEECCHHHHHHHHCC
PELRLHLSVQGSATNYEAINFYHEHFGVSRAVLPRVLSLAQVEQVAENTPVEIEVFGFGS
CEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LCVMVEGRCALSSYATGESPNTRGVCSPAKAVRWQKTPDGLESRLNGVLIDRYEDGENAG
EEEEEECCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCEEEEEEECCCCCC
YPTLCKGRFTVADESYYAIEEPTSLNTLELLPKLMQIGIRAIKIEGRQRSPAYVAQVTRV
CCCEECCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHH
WRDAIDQCTANLARYYVKPAWMTELNKVAEGQQHTLGAYHRPWK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCC
>Mature Secondary Structure 
TQSSHFATGAAPIELVCPAGSLPALKAAVDNGADCVYLGFRDATNARNFAGLNFDAQAI
CCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AAGIRYARERGRKVLVALNTYPQPDGWAAWREAVGRAADAGVDAIIVADPGLMRFARERY
HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCHHCCCCCEEEEECCHHHHHHHHCC
PELRLHLSVQGSATNYEAINFYHEHFGVSRAVLPRVLSLAQVEQVAENTPVEIEVFGFGS
CEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LCVMVEGRCALSSYATGESPNTRGVCSPAKAVRWQKTPDGLESRLNGVLIDRYEDGENAG
EEEEEECCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCEEEEEEECCCCCC
YPTLCKGRFTVADESYYAIEEPTSLNTLELLPKLMQIGIRAIKIEGRQRSPAYVAQVTRV
CCCEECCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHH
WRDAIDQCTANLARYYVKPAWMTELNKVAEGQQHTLGAYHRPWK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]