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The map label for this gene is petB [H]

Identifier: 126453900

GI number: 126453900

Start: 3623374

End: 3624756

Strand: Reverse

Name: petB [H]

Synonym: BURPS1106A_3706

Alternate gene names: 126453900

Gene position: 3624756-3623374 (Counterclockwise)

Preceding gene: 126454818

Following gene: 126452047

Centisome position: 90.88

GC content: 62.47

Gene sequence:

>1383_bases
ATGGCGACCGATAACAAAGAGATCTCCACAACAGGCTTGCTCGGCTGGGTCGACCGGCGCTTTCCCCTCACTTCCACGTG
GAAGCAGCATCTTTCCGAGTATTACGCGCCGAAGAATTTCAACGTGTGGTATTTCTTCGGGTCGCTCGCGCTGCTCGTGC
TCGTCAACCAGATCGTCACGGGCATCTTCCTGACGATGAACTACAAGCCCGATTCGACGCTCGCGTTCGCGTCGGTCGAA
TACATCATGCGCGAGGTGCCGTGGGGCTGGCTGATCCGCTACCTGCACTCGACGGGCGCGTCGATGTTCTTCGTCGTCGT
CTACCTGCACATGTTCCGCGGCCTCCTGTACGGCTCGTACCGCAAGCCGCGCGAACTCGTGTGGATCTTCGGCTGCGCGA
TCTTCCTGTGCCTGATGGCCGAGGCGTTCTTCGGCTACCTGCTGCCGTGGGGCCAGATGTCGTTCTGGGGCGCGCAGGTG
ATCGTGAACCTGTTCTCGGCGATTCCGTTCGTCGGCCCTGACCTGTCGCTGTGGATTCGCGGCGACTACGTCGTGTCCGA
CGTCACGCTGAACCGCTTCTTCGCGTTCCACGTGATCGCGATTCCGCTCGTGCTGTTGCTGCTCGTCGTCGCGCACCTGA
TCGCGCTGCACGAAGTGGGGTCGAACAACCCGGACGGCATCGAGATCAAGGAGAAGAAGGACGAGAAGGGCGTGCCGCTC
GACGGCATTCCGTTCCATCCGTACTACTCGGTGCACGACTTCTTCGGCGTCTGCGTGTTCCTGATGGTGTTCGCGCTGAT
CGTGTTCTTCATGCCGGAGATGGGCGGCTACTTCCTCGAGGCGAACAACTTCATCCCGGCGAACCCGCTGCAGACGCCGC
CCGAGATCGCGCCCGTCTGGTACTTCACCGCGTTCTACGCGATGCTGCGCGCGACGACCGACCCGTTCAAGATCGTGCTG
ATGATCGTGATCGCCGCGCTCGGGCTGCTTGCGCTCGTGCGGGCGCGCGGCAAGTGGAAGATCGCGCTGCCGGTGCTCGC
CGCGGCGCTCGTCGTCTTCATGTACTTCACGGAATCGAAGTTCTGGGGCGTCGTCGTGATGGGCGGGGCCGTCGTCACGC
TGTTCTTCCTGCCGTGGCTCGACCGCAGCCCGGTGAAGTCGATCCGCTACCGGCCGTTCTTCCACAAGGTATTTTTCGGC
ATCTTCGTTGTCGTGTTCCTGACGCTCGCGTTCCTCGGCACGCGACCGCCTTCGCCCGCCGCGACGCTGATCGCCCAGGT
ATGCGCGCTCGTGTACTTCGCGTTCTTCCTCGGCATGCCGTTCTGGACGCCGCTTGGCACCTTCAAGCAGCCGCCGGAAC
GCGTGCGGTTCAAATCCCATTGA

Upstream 100 bases:

>100_bases
CAAGAACAAGCCGGCTCCGCAGAATCTGGACGTCCCGCCATACATGTTCACGTCGGCCACGACGCTCGTGATCGGCAAGG
ACGAGAAAGGAGAAGCGTAA

Downstream 100 bases:

>100_bases
CGTGAGCGAAGGGGGAATTCGTATGAAGAAATTGCTTTCGACGCTCGCAATGTTTATTGTGTCGGCATGTCTGCTGACGA
GCGTATCCGTGCGGGCCGAA

Product: ubiquinol-cytochrome c reductase, cytochrome b

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MATDNKEISTTGLLGWVDRRFPLTSTWKQHLSEYYAPKNFNVWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVE
YIMREVPWGWLIRYLHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQV
IVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLLLLVVAHLIALHEVGSNNPDGIEIKEKKDEKGVPL
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFMPEMGGYFLEANNFIPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVL
MIVIAALGLLALVRARGKWKIALPVLAAALVVFMYFTESKFWGVVVMGGAVVTLFFLPWLDRSPVKSIRYRPFFHKVFFG
IFVVVFLTLAFLGTRPPSPAATLIAQVCALVYFAFFLGMPFWTPLGTFKQPPERVRFKSH

Sequences:

>Translated_460_residues
MATDNKEISTTGLLGWVDRRFPLTSTWKQHLSEYYAPKNFNVWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVE
YIMREVPWGWLIRYLHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQV
IVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLLLLVVAHLIALHEVGSNNPDGIEIKEKKDEKGVPL
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFMPEMGGYFLEANNFIPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVL
MIVIAALGLLALVRARGKWKIALPVLAAALVVFMYFTESKFWGVVVMGGAVVTLFFLPWLDRSPVKSIRYRPFFHKVFFG
IFVVVFLTLAFLGTRPPSPAATLIAQVCALVYFAFFLGMPFWTPLGTFKQPPERVRFKSH
>Mature_459_residues
ATDNKEISTTGLLGWVDRRFPLTSTWKQHLSEYYAPKNFNVWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVEY
IMREVPWGWLIRYLHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVI
VNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLLLLVVAHLIALHEVGSNNPDGIEIKEKKDEKGVPLD
GIPFHPYYSVHDFFGVCVFLMVFALIVFFMPEMGGYFLEANNFIPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVLM
IVIAALGLLALVRARGKWKIALPVLAAALVVFMYFTESKFWGVVVMGGAVVTLFFLPWLDRSPVKSIRYRPFFHKVFFGI
FVVVFLTLAFLGTRPPSPAATLIAQVCALVYFAFFLGMPFWTPLGTFKQPPERVRFKSH

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=402, Percent_Identity=38.5572139303483, Blast_Score=255, Evalue=8e-68,
Organism=Saccharomyces cerevisiae, GI6226529, Length=401, Percent_Identity=40.6483790523691, Blast_Score=249, Evalue=9e-67,
Organism=Saccharomyces cerevisiae, GI6226532, Length=241, Percent_Identity=48.5477178423236, Blast_Score=209, Evalue=9e-55,
Organism=Saccharomyces cerevisiae, GI6226531, Length=152, Percent_Identity=53.9473684210526, Blast_Score=153, Evalue=5e-38,
Organism=Saccharomyces cerevisiae, GI6226530, Length=137, Percent_Identity=49.6350364963504, Blast_Score=122, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 52405; Mature: 52274

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
ATDNKEISTTGLLGWVDRRFPLTSTWKQHLSEYYAPKNFNVWYFFGSLALLVLVNQIVT
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHH
GIFLTMNYKPDSTLAFASVEYIMREVPWGWLIRYLHSTGASMFFVVVYLHMFRGLLYGSY
HHEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
RKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
GDYVVSDVTLNRFFAFHVIAIPLVLLLLVVAHLIALHEVGSNNPDGIEIKEKKDEKGVPL
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFMPEMGGYFLEANNFIPANPLQTPPEIAPVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHH
YFTAFYAMLRATTDPFKIVLMIVIAALGLLALVRARGKWKIALPVLAAALVVFMYFTESK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCC
FWGVVVMGGAVVTLFFLPWLDRSPVKSIRYRPFFHKVFFGIFVVVFLTLAFLGTRPPSPA
CCEEEEEHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
ATLIAQVCALVYFAFFLGMPFWTPLGTFKQPPERVRFKSH
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA