Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 126453757

GI number: 126453757

Start: 438016

End: 439221

Strand: Direct

Name: yfdE [H]

Synonym: BURPS1106A_0473

Alternate gene names: 126453757

Gene position: 438016-439221 (Clockwise)

Preceding gene: 126454195

Following gene: 126452953

Centisome position: 10.98

GC content: 72.72

Gene sequence:

>1206_bases
ATGCGCAACGAACCGGGCGCGCGGCCGCTCGCGGGGATCAAGGTCCTCGACTTCTCGCGCGTGCTCGCCGGGCCGTGGTG
CGCGATGGTGCTCGCGGATCTCGGCGCGGAAGTGATCAAGATCGAGCATCCGCGGCGCGGCGACGACACGCGCGACTGGG
GGCTGCGCGTCGGCGACACCGAGACGACCTATTTCAATAGCGTGAACCGCAGCAAGCGCTCGATCTGCGTCGACCTGCAG
ACGCAAGCGGGGCGGCGCATCGCGCGCGAGCTCGCCGCGCAGGCGGATGTCGTCGTGCACAACTTCAAGGCGGGCGGCGC
GGAGAAGCTCGGCCTGGGCTACGACGCGCTTGCCGCGCTCAATCCGCGGCTCGTCCACTGCGCGATCTCCGGCTACGACC
GCTCGGGCCCCGAAGCGGGCCGACCGGGCTACGACCTCGTCGTGCAGGGCGAGGCCGGCCTGATGGCGCTGAACGGCGAA
GCCGGGCGGCCGCCGCTGAAGTTCGGCGTCGCGGTGGCGGACCTCTTCACCGGCATGTACTCGGCGCAGGCGATCCTCGC
CGCGCTCTACGAGCGGCACGCGACGGGGCGCGGGCGGCGCATCGAGATGGCGCTGTTCGATTGCGGGCTGATGGTCACGT
CGTATTACGGGCTCGAAGCGCTGCTGATGGGCGAGGACCCGCCGCGCTACGGCAACGCGCATCCGTCGATCGTGCCGTAC
GGCGTGTTCGACGCGGCGGACGGCCCGATCGTGATCACGGTCGGCAATAACCCGCAGTTCGCGCGCTTTTGCGACGTGAT
CGGCCGCCCGGAGCTCGCGGCCGACGCGCGCTTCGCGACGAACATCGCCCGCTCCGCGAATCGCGCGGCGCTGCTGCCGG
AAATTCTCCGCGAGCTCGGCCGCCGGCCGCGCGCGGCGCTGCTCGCCGCGCTCGCCGACGCGGGCATTCCGTGCGGCGAG
GTGCTCGGCTTGCGCGAGGCGCTCACGTCGGAGCGCGCGCGATCGGCGGGGCTCGTCACGCGGCAGCCGCATCCGGTCGC
GGGCGAGGTCGACGTGCTCGCGCCGCCGTACCGGTTCGACGGCGAGCGCCTGCCCGTGCGCGGCGCGCCGCCCGTGCTCG
GCGCGGATACCGATCGCGTGCTCGGCGAGTGGCTCGGGATGTCGGGGCGCGAGATCGCGCAACTGCGCAGCGAACGCGTC
GTCTGA

Upstream 100 bases:

>100_bases
CTCGTGATGATCGACCACCAGCTCGGCGACGAGGATCACCACCTCGCGCGCTACGCCGCGCTGTCGAGGCAATAGCCGCC
AACGAACGGAGGAGACGAAG

Downstream 100 bases:

>100_bases
GCGCGGCGGCCGCGCGCGACGGCCGTGTGGATCGGCCGCGCGCGTGGGCCGCGCGGCGCGGATCGTCGGCGAGCCGGGCG
CGGAACGCGTCGGCGGAGGT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRNEPGARPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKIEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TQAGRRIARELAAQADVVVHNFKAGGAEKLGLGYDALAALNPRLVHCAISGYDRSGPEAGRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAALLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALTSERARSAGLVTRQPHPVAGEVDVLAPPYRFDGERLPVRGAPPVLGADTDRVLGEWLGMSGREIAQLRSERV
V

Sequences:

>Translated_401_residues
MRNEPGARPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKIEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TQAGRRIARELAAQADVVVHNFKAGGAEKLGLGYDALAALNPRLVHCAISGYDRSGPEAGRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAALLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALTSERARSAGLVTRQPHPVAGEVDVLAPPYRFDGERLPVRGAPPVLGADTDRVLGEWLGMSGREIAQLRSERV
V
>Mature_401_residues
MRNEPGARPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKIEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TQAGRRIARELAAQADVVVHNFKAGGAEKLGLGYDALAALNPRLVHCAISGYDRSGPEAGRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAALLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALTSERARSAGLVTRQPHPVAGEVDVLAPPYRFDGERLPVRGAPPVLGADTDRVLGEWLGMSGREIAQLRSERV
V

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=38.3248730964467, Blast_Score=292, Evalue=4e-79,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=36.4285714285714, Blast_Score=281, Evalue=9e-76,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=34.2639593908629, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=33.0952380952381, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI266456254, Length=396, Percent_Identity=26.2626262626263, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42794625, Length=396, Percent_Identity=26.2626262626263, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=31.1023622047244, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458397, Length=254, Percent_Identity=31.1023622047244, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=36.231884057971, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=36.231884057971, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI87082093, Length=339, Percent_Identity=34.8082595870207, Blast_Score=237, Evalue=8e-64,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.6954436450839, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1786222, Length=332, Percent_Identity=26.8072289156627, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=29.126213592233, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=267, Percent_Identity=24.7191011235955, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=41.1616161616162, Blast_Score=302, Evalue=3e-82,
Organism=Drosophila melanogaster, GI24585488, Length=273, Percent_Identity=27.4725274725275, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42980; Mature: 42980

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEPGARPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKIEHPRRGDDTRDWGLRVGDT
CCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCHHCCEEECCC
ETTYFNSVNRSKRSICVDLQTQAGRRIARELAAQADVVVHNFKAGGAEKLGLGYDALAAL
CCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGPEAGRPGYDLVVQGEAGLMALNGEAGRPPLKFGVAVADLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAALLPEILRELG
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
RRPRAALLAALADAGIPCGEVLGLREALTSERARSAGLVTRQPHPVAGEVDVLAPPYRFD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC
GERLPVRGAPPVLGADTDRVLGEWLGMSGREIAQLRSERVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRNEPGARPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKIEHPRRGDDTRDWGLRVGDT
CCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCHHCCEEECCC
ETTYFNSVNRSKRSICVDLQTQAGRRIARELAAQADVVVHNFKAGGAEKLGLGYDALAAL
CCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGPEAGRPGYDLVVQGEAGLMALNGEAGRPPLKFGVAVADLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAALLPEILRELG
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
RRPRAALLAALADAGIPCGEVLGLREALTSERARSAGLVTRQPHPVAGEVDVLAPPYRFD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC
GERLPVRGAPPVLGADTDRVLGEWLGMSGREIAQLRSERVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]