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The map label for this gene is degU [H]

Identifier: 126453676

GI number: 126453676

Start: 1303117

End: 1303956

Strand: Reverse

Name: degU [H]

Synonym: BURPS1106A_1334

Alternate gene names: 126453676

Gene position: 1303956-1303117 (Counterclockwise)

Preceding gene: 126453022

Following gene: 126454801

Centisome position: 32.69

GC content: 65.83

Gene sequence:

>840_bases
ATGAGGTTTCTGGTGCTCAATTCGGACGCAGAGCGTCGCGACGGCTTGAAAACCCTGCTGCGTCAAATCGACCGACATGC
CGGCTACAACGACGCCAAGGACTGGCGGCAGGCACAACGGCTCATCAAGCAGCAGAGCTTCGACTTGATCGTGGTCGACT
GGCAGGACATCAAGCGCCTCGGAGATCTGCACGCGCTTTGCCAAGCTTGCGCGCCCACGCCCGTCGCGGCGCTCGTCGAC
GACGCATCGCCCGTGCATGCGCAAGCGCTCTTCGAAGCCGGTGTGCTTGGCGTCATTTCACGCACGACGCGCCCGCACCT
CATCGTTCGCGCACTCGAAATGGTGTTGCTCGGCGGGCACTACGTGCCGCCGAGCGCGCTCAACCTCACCGAGCCGGCGG
CGCGCGCGAGGGACGGCCGCGTCGAAGCGATTGTGAGCCAGTTGCCGCGCAGGAAGCGCTCGCCGTGCAGTTTGCTGTCG
CCGCGCCAGGCGCAGATCATGCGGTTCGTTCACATGGGCAGCACCAACAAGATGATCGCGCGCACGCTCGGCATCAGCGA
AGGCACGGTCAAGATCCATCTGGCCAGCATCTTCCAGCAGTTGGGCGCGACAAATCGCGCCGCCGCGGTCGCGATCTACA
ACGGCTGGCTGCCACCGCACCTCGAAGTGCTGCTCTCCGCACGCGAGACCTCGCCGAAACCCGTACACGGTGCGGCCGGC
CCCGTGCCGCTGCGCCCGGCGAAATCGCGGCATCCGTACCCGCTCGCCGCCGAAAACGAATCGTCTGCCCAGCCGCTCAT
CGCGGCTGAACCGCGCACGCCGTTCAAGGCGAACGAATAG

Upstream 100 bases:

>100_bases
TTATGACTTTCAGCTAGGCCGACATTTTGTAATGTCTTTGCCATTATTGAGGAGATGGCACTCGTCGTTTCTCGATCAAT
CGGATAAGCGGAGGCAAAAC

Downstream 100 bases:

>100_bases
CCGGTAAAACCCGCGTAGAGGGTGAATCCATTCCCATCTTTTGTATTCAACGAGTAATATAAAAACATGGGTTTCCTCTA
CACGCCGCTTCCGTTCTGGA

Product: putative DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVD
DASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Sequences:

>Translated_279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVD
DASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE
>Mature_279_residues
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVD
DASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS
PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
PVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30577; Mature: 30577

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRL
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
GDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGH
HHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
YVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIA
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
RTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
HHHCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
PVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRL
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
GDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGH
HHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
YVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIA
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
RTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVHGAAG
HHHCCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
PVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]