Click here to switch to the map view.

The map label for this gene is fimF [H]

Identifier: 126453583

GI number: 126453583

Start: 2085601

End: 2086131

Strand: Reverse

Name: fimF [H]

Synonym: BURPS1106A_2090

Alternate gene names: 126453583

Gene position: 2086131-2085601 (Counterclockwise)

Preceding gene: 126455448

Following gene: 126454040

Centisome position: 52.3

GC content: 64.03

Gene sequence:

>531_bases
ATGAAAGCAAAAGGAATGCAATACGGCCTGACGGCCGTTCTGCTGTCGATGCTCTCGGGCGGCGCGGCTTATTCGCAGAC
CGCGACGACCGGCACCATCAATTTCACCGGCAGCATCACCGACGTGCCGTGCGAAATCGACACGGCCGCCACGAGTAGTA
ACGTGACGATGGCCAAGGTTTTCGCGAACGACTTCAGCGGCGTGGGGTCGACCACCGGCACGACGGCATTCAAGATCGTC
CTCAAGAATTGCGGCGCGTCGACGAGCGGCGCGACGGTGCGCTTCATGGGCACGACTGACAGCGCCAATCCCGCGGCGCT
CCAGACGACCGCGGGCGGAGCGGGAGGGGTCGCGTTGCAGCTCGTCGACGACACCGGCACGCCGATCAGTATCGGCTCGA
GCAGCAAGGCATACACGATTGCCGAGGGCGACAACACGTTCAATTTCGCGGCGCGCTATATCGCGACGTCCGCGACCGTG
ACGGGCGGCGCGGCCAATGCCACGGCGGTATTCGCGCTGACGTACAAGTAG

Upstream 100 bases:

>100_bases
ATCGCGGTTTTTGTCGAAGAATTTTATTCGTTGCAAATGGTGACACGATGAATGGCGGGATTTAGAATGCTTTCGCCTAT
CCATTGCGGACGGAGTCGAG

Downstream 100 bases:

>100_bases
CGGGCGCCGAAGCGTTCCTGCATGCGTGCAAGTGAGGATGCAAAACCGGATTCCTTGACGCGGCCCCGAGCCGCGGCTTT
CCCAGAGAGAGACGAAACAT

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKAKGMQYGLTAVLLSMLSGGAAYSQTATTGTINFTGSITDVPCEIDTAATSSNVTMAKVFANDFSGVGSTTGTTAFKIV
LKNCGASTSGATVRFMGTTDSANPAALQTTAGGAGGVALQLVDDTGTPISIGSSSKAYTIAEGDNTFNFAARYIATSATV
TGGAANATAVFALTYK

Sequences:

>Translated_176_residues
MKAKGMQYGLTAVLLSMLSGGAAYSQTATTGTINFTGSITDVPCEIDTAATSSNVTMAKVFANDFSGVGSTTGTTAFKIV
LKNCGASTSGATVRFMGTTDSANPAALQTTAGGAGGVALQLVDDTGTPISIGSSSKAYTIAEGDNTFNFAARYIATSATV
TGGAANATAVFALTYK
>Mature_176_residues
MKAKGMQYGLTAVLLSMLSGGAAYSQTATTGTINFTGSITDVPCEIDTAATSSNVTMAKVFANDFSGVGSTTGTTAFKIV
LKNCGASTSGATVRFMGTTDSANPAALQTTAGGAGGVALQLVDDTGTPISIGSSSKAYTIAEGDNTFNFAARYIATSATV
TGGAANATAVFALTYK

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Involved in the integration of fimH in the fimbriae [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=155, Percent_Identity=36.1290322580645, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082421, Length=181, Percent_Identity=32.5966850828729, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787781, Length=177, Percent_Identity=25.4237288135593, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87081805, Length=150, Percent_Identity=30.6666666666667, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787174, Length=151, Percent_Identity=28.476821192053, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1790769, Length=153, Percent_Identity=34.640522875817, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786938, Length=185, Percent_Identity=29.1891891891892, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081753, Length=161, Percent_Identity=29.1925465838509, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17463; Mature: 17463

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKGMQYGLTAVLLSMLSGGAAYSQTATTGTINFTGSITDVPCEIDTAATSSNVTMAKV
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCEEECCCCCCCCEEEEE
FANDFSGVGSTTGTTAFKIVLKNCGASTSGATVRFMGTTDSANPAALQTTAGGAGGVALQ
EECCCCCCCCCCCCHHEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEEE
LVDDTGTPISIGSSSKAYTIAEGDNTFNFAARYIATSATVTGGAANATAVFALTYK
EECCCCCEEEECCCCCEEEEECCCCCHHHEEEEEEECEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKAKGMQYGLTAVLLSMLSGGAAYSQTATTGTINFTGSITDVPCEIDTAATSSNVTMAKV
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCEEECCCCCCCCEEEEE
FANDFSGVGSTTGTTAFKIVLKNCGASTSGATVRFMGTTDSANPAALQTTAGGAGGVALQ
EECCCCCCCCCCCCHHEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEEE
LVDDTGTPISIGSSSKAYTIAEGDNTFNFAARYIATSATVTGGAANATAVFALTYK
EECCCCCEEEECCCCCEEEEECCCCCHHHEEEEEEECEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2890081; 7610040; 9278503; 1970114 [H]