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The map label for this gene is bexD [H]

Identifier: 126453256

GI number: 126453256

Start: 3205515

End: 3206636

Strand: Reverse

Name: bexD [H]

Synonym: BURPS1106A_3289

Alternate gene names: 126453256

Gene position: 3206636-3205515 (Counterclockwise)

Preceding gene: 126454154

Following gene: 126453194

Centisome position: 80.4

GC content: 60.96

Gene sequence:

>1122_bases
ATGGGCGCGGTCACGCTCGCCGGTTGCTCAAGTATCCCTACGTCGGGGGCCAGTGGCGCGCAAATCGCGCGGGCTGCGCA
GAGTCCATCCGGAATTCAGATCGTCGATGTGACCGAGGATGTCGCGCGCCAGCTGTTTGCTGATCGAAACACGGCGGACT
TCGTGACGGCGCTGGGCGGCGGTGCGTCGTTCCGGCAACAGTTGGGCGTCGGCGATACGATTCAGGTGTCCATCTGGGAG
GCGCCACCCGCCACGCTTTTTGGCGCGGCTCAGTCGGAAGGGAGTTCGGGGCCGGCGAACGCGCGCGTGACGGTGTTGCC
CGATCAAGCCATCGATGGCGACGGCAATGTCAATATTCCGTTTGCGGGCCAGGTGAAGGCGGCCGGCCGCTCGCCCACGC
AGTTGGCGCGTGAGATTGCCGCGCGGCTGAAGAGCATGGCGCACGATCCGCAAGTGCTCGTGAAGCTTTCACGCAACGAG
ACGTCATATGTGACGGTCGTGGGCGATGTGGCCGAAAACGCTCGCATGGCTCTGACCGCTCGGGGCGAGCGCCTGCTTGA
TGCATTGGCGAGCGCAGGCGGGGCGAAGCACCCGGTTGACAAAGTTACGATCCAGATAACGCGCGGCAAGACGGTGGCCT
CGTTGCCGCTCGACATGGTTATTCGTGATCCGCGGCAGAACGTCCCGTTGCATGCGGGCGATGTGGTCACTGTCCTGTTT
CAGCCATATAGCTTTACGGTGCTCGGCGCGACGGGCAAGAATGACGAAATCAATTTTGAAGCGAAGGGCATCACGCTTGC
GCAGGCCCTGGCGCGTGCTGGCGGCTTGCAGGATTCGCGCGCCGATGCAAAGGGCGTATTCATCTTCCGACTTGAAGACG
CCAACGCGCTGAAATGGCCGACGGCTCCCGTGCGTACGACTGCGGATGGAAAGGTGCCTGTCGTGTATCGCGTGAATCTT
CGCGATCCGAATTCGTTCTTCGTGGCTCAGAGCTTCAGGGTCGACAACAACGATCTGTTGTACGTTTCGAATGCGCCGAT
TGCCGAACTTCAAAAATTCTTGAATGTCGTGTTCTCCGTTGCGTATCCGGTGATTACCGGCGTTCAGACAGTCAGGTACT
GA

Upstream 100 bases:

>100_bases
CCGCCTACCGGAAGTTATGCGACAATGCGCGAGCTCATAGGTTTGCCAACTATAAACAATGTCGCGTCCATTCTGCAAAA
CGTTTTTGATCGCGTGTGTC

Downstream 100 bases:

>100_bases
TGACGGTGCTGCAGGTGATGGGTGCCATTGCCGACGGTAAGGGCATGTGTTCGTTGTTTCGGGTGGTAATCGAGTAACAC
TATGAATGGCGTTGCATTCG

Product: capsular polysaccharide biosynthesis/export periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQQLGVGDTIQVSIWE
APPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNE
TSYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQNVPLHAGDVVTVLF
QPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRTTADGKVPVVYRVNL
RDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY

Sequences:

>Translated_373_residues
MGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQQLGVGDTIQVSIWE
APPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNE
TSYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQNVPLHAGDVVTVLF
QPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRTTADGKVPVVYRVNL
RDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY
>Mature_372_residues
GAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQQLGVGDTIQVSIWEA
PPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNET
SYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQNVPLHAGDVVTVLFQ
PYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRTTADGKVPVVYRVNLR
DPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the BexA, BexB and BexC proteins. May function as a membrane anchor for capsular polysaccharides. Possible porin properties [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=316, Percent_Identity=30.6962025316456, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788376, Length=385, Percent_Identity=25.4545454545455, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 39309; Mature: 39178

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGG
CCCEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHCCC
GASFRQQLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIP
CHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEECC
FAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNETSYVTVVGDVAENARMALTA
CCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEE
RGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQNVPLHAGDVVTVLF
CHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCCCCCCCCCCEEEEEE
QPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWP
CCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECC
TAPVRTTADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSV
CCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHH
AYPVITGVQTVRY
HHHHHHHHHHHCC
>Mature Secondary Structure 
GAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGG
CCEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHCCC
GASFRQQLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIP
CHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEECC
FAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNETSYVTVVGDVAENARMALTA
CCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEE
RGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQNVPLHAGDVVTVLF
CHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCCCCCCCCCCEEEEEE
QPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWP
CCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECC
TAPVRTTADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSV
CCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHH
AYPVITGVQTVRY
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2082145 [H]