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The map label for this gene is yccS [C]

Identifier: 126453098

GI number: 126453098

Start: 1358349

End: 1360625

Strand: Reverse

Name: yccS [C]

Synonym: BURPS1106A_1387

Alternate gene names: 126453098

Gene position: 1360625-1358349 (Counterclockwise)

Preceding gene: 126452958

Following gene: 126453795

Centisome position: 34.11

GC content: 67.24

Gene sequence:

>2277_bases
ATGCGCTATTCGGTCGAAATCAGGAAGTTTTTCTACAGCCAGTATTTCTTCGGCGGCCTACGTATCGCGCTCGGCGTGTC
GCTGCCCGCCGTACTGAGCCTCGCCGTGCTGCACGACCGCGAGCTCGGCTTCACGATCGCCACGGGCGCGCTCGGCGCAT
GCGTCGTCGACATGCCGGGCCCGCTCAAGTACAAGCACAACGAAATGCTCGCGTGCAGCGTGATCGGCTTTTTCTCCGCG
CTCGCGACCGGGCTCGCGACGCCGAACATCTTCGCGCTGTGGCTCACGATCGTGCCGCTCACGTTCGCGCTGTCGCTCAT
CGTCGTCTACGGCAACCGCTGGCCGCAGATCAGCTTCGCGACGCTGTTCATGATGGTGATGACGCTCGAAGAGAAATTCA
CGCCGCTGCAGGCGCTCGTCAACGCGTCGTGGATTCTCGCGGGCGGGCTGTGGTACACGTACTGGGCGACCATCGTGTCG
CGCTGGCAGGCGCGCCGCATCGAGCAGCAGGCGCTCGCCGAGAGCCTGTTCGCATGCGCGTCGTACCTGCTCGCGCGCGC
GGACTTCTACGATCTCGACGCGGATCTCGACGAGTGCTACCGCAACCTCGTCGCCCGGCAGATCACCGCGGTGGAGACGC
AGGAAACCGCGCGCGACATCGTGCTGCGCAACCTGCCGAAGCTGCGCCGCGGCAAGCTCGACCCGGGCCGCACGATGATG
TTCAACCTGTTCATCAACAGCGTCGACCTGCATGAGATGTTCGTCGGCGCGCACACCGATTACCCGCTCGTGCGCAGCAC
GTTCGGCGGCTCGGACCTGATGATCTTCTACCGCGACCTGATCCGCAAGGCCGCCGCCGACCTCGAGGAAATCGGCTTCG
CGGTGCTCGAGAACCGGCTGCCGCATTCGCGCATCAGCGTGAAGGCCGAATTGCGCGCGATCGAATACGAGATCGAGCTG
ATGCGCAAGAAGCAGTTCGCGGCGACCCACCCCGAAGCGTACGCGGCCGTGCTCGCGACGTTCCGCCGGATCTGGAGCGC
GACGCGCCTCATCGACAAGATGCGCCGCAACCTGTCGGGCAGCGCCGACGCGCAGCGCACCGAGCTGAAGATCGACAAGG
CGCTCACGCGCTTCCTGCAGAAGCGCCGGATGTCGCCGCTGCTGATTTTCTCGAACCTGAACATGGGCTCGCCGAGCTTG
CGGCACGCGCTGCGCGTGACGATCGCGGTGGCGGTCGGCTTCTGGCTCGGGCGCCTGCTGCCGCTCACGAACGCTTACTG
GATCGTGATGACGAGCATCATCATCCTGAAGCCCGGCTATTCGCTCACGAAGCAGCGCAACGCGCAGCGTATCGTCGGCA
CGCTGATCGGCTGCGCGGCGAGCCTCGCGCTGATCTACACGGTGCACGAGCCGCACGTGCTGATCGCGATCATGTTCGGC
TCGATGGTGATGAGCTACAGCCTGCTGCTCTTCAATTACGCGGCGAGCGTCGTGTTCACGTCGTCGTACGTGCTGCTGCT
CTTCCATCTGCTCGCGCCCGGCAACATGCGGATCATCGGCGAGCGCGCGATCGACACCGTCGTCGGCTGCATGATCGCGA
TCGCCGCGAGCCGCCTCTTCCCGTACTGGGAGTACCGCGCGATCGGCAAGCTCGTCGCCGACGCGCTCGCGACGACGCGC
AAGTACTTCGAGGCCACCTGGCGCGCGGGCCGCGGCAAGGCGGCCCCCGCCGTGCCCGCCGCCGACGGCGCGGCGGCCGT
GCCCGCGGTGGCGGCCGTCGTCGACGCGGTGGCGCCCGGCCTCGACGGCGACTATCAATACCGGCTCGCGCGCAAGAACG
TGCACATCGCGTTCGCGAACCTCGGCCAGGCGTTCCAGCGGATGATGCTCGAGCCGAAGGCGCACCAGAAGTTCGTGCCC
GAGCTCAACGATCTGCTCGTGCAGACCCACGTGCTCGGCGCGCAGATCACCGCGGCCGCGCCGCTGCTGCGCCACGCGTG
CGAGCAGGGCAATCCGCCCGCGCTCGAGCGCGGAATGGCCGCCGTGCGCGAGCACCTCGAGCAGGCCGAGGCCGGCGTGC
CGCCGCCGGCGAACCAGGCCGAGACGAGCAAGCAGCTCACGCGCGAGCTCGATTCGATGGTCGTCGACGCCGAGCGCTCC
GACGCGGGCGCCGATCTCACGCACGACCTGAAGGTGCTCGCGCATCAGTGCAAGCAGATGCTCGCGTCGTCGCTGCTGAT
CCGCAAGGACGCGAGCGTGATCCGGCTGCCCGAGTGA

Upstream 100 bases:

>100_bases
CGCCGGCCCCGAAACACGGCTTTCGCGACGCGGAAATACGATAGACTCGTCGCCAATCAGAACACCCTCGGCGCCCCGGC
GCCGGCTCACTCGCCCATCG

Downstream 100 bases:

>100_bases
GCCGCCCGCCGCCCCCTTTCCTTTCCACCGTTTCGCGCCGCGCACGCACTCAGGGATTCCCTGACTACTGCCCGCGCGCG
TCGATTGGTATGATCTATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSA
LATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVS
RWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMM
FNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIEL
MRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSL
RHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFG
SMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTR
KYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVP
ELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERS
DAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE

Sequences:

>Translated_758_residues
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSA
LATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVS
RWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMM
FNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIEL
MRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSL
RHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFG
SMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTR
KYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVP
ELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERS
DAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
>Mature_758_residues
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSA
LATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVS
RWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMM
FNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIEL
MRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSL
RHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFG
SMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTR
KYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVP
ELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERS
DAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=647, Percent_Identity=22.8748068006182, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI87082248, Length=432, Percent_Identity=27.3148148148148, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84128; Mature: 84128

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCC
PLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
TLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACA
HHHHHHHHHHHHCCHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHEE
FNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRL
EEHHHCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCC
PHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLL
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFG
HHCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH
SMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHC
PYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
LDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAA
CCCCCEEEEECCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCC
PLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
TLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACA
HHHHHHHHHHHHCCHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHEE
FNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRL
EEHHHCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCC
PHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLL
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFG
HHCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH
SMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHC
PYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
LDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAA
CCCCCEEEEECCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]