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The map label for this gene is yjcC [C]

Identifier: 126452958

GI number: 126452958

Start: 1371947

End: 1373158

Strand: Reverse

Name: yjcC [C]

Synonym: BURPS1106A_1394

Alternate gene names: 126452958

Gene position: 1373158-1371947 (Counterclockwise)

Preceding gene: 126455260

Following gene: 126453098

Centisome position: 34.43

GC content: 69.55

Gene sequence:

>1212_bases
GTGCGATATCACGACGTCACCCTTGCCAGCGCCTTTCAGCCGGTCATCTCGATCACGCACAAGCGCGTCGTCGGCTATGA
GGCGCTCGCCCGCGCGACCGACGCGAACGGCGCGCCGATTTCGCCCGACACGCTGTTCGCGCGTGCGCAGGCGCGCGGCG
AGACCATCCTGCTCGATCGGCTGACCCGGTGCCTGCACGTCGCGAACTTCGCCGCGCAGGACACGGGCGCGTGCTGGCTG
TTCCTGAACGTGCTGCCGCAGATGTTCGACGCCGGCATCGCGCCGGGCGCGTTCATCGAGGCGCTTTGCGCGCACTTCGC
GCTGCCGCCGACGCGCGTCGTGCTCGAAGTGATCGAGCAGCCGTCGCGCAACGAGGTCGCGCTCGCCCGCACGATCGACA
TGATCCAGCACGGCGACTTCCTGATCGCGGTCGACGATTTCGGCACCGGCTTCTCGAACTTCGACCGCATCTGGCAGATC
AAGCCCGACATCGTGAAGCTCGACCGCTCGATCCTCGAGCGCTCGCTCGCGGCAAGCGACGCGCATCGGATCATTCATCA
TCTCGTCACGATGCTGCATCACGCGGGCACGATGGTGCTCGCGGAGGGCGTCGAAAACGAAGACGCGCTGCAGATCCTGA
TGGACGCCGACGTCGATTTCGTGCAGGGCTTCTGCTTCGGCCGGCCCGCCCCGTCGCTCGAGCACGCGCGCCGCGCCGCG
CCGGCGCGCATCGAGGCCGCGTGGCGGCGCTTCGCCGAGCGCACGAAGGCACGGTGCGGCGACGTCGTGCATCCCGGCTT
CGACACGATCGAGCGGATCATGCTCACGGGCGCCGCCGACTATGCGCAGACCCGAAACCTGCGCGACGCCGCGCAGCGGC
TGCTGACGAGCCCGATCGTGCGGCGCGTGTTCGTGGCGGAAGCGAACGGCGAGCAAGTGGAGCCATCGGTCGCGATCGAG
ACGCCGGACGCGCCGAGCGCGACGGCGCGGCGGCTCGCGCCGCTGCTGCCCGAGCTGCACTGCAACTGGTCGCGGCGCGC
GTACTTCCAGCGCGCGATCGCGGCGCCCGGACGCGTCGCGCTGATGGGCCCGCACTTCTCGCTGACGGACGGCCGCGACT
GCTACACGGCCGCCGTCGCGATCCACCTCGGGACGACGCTGAAGGTGTTCTGCGTCGACTTCGACTTTTCGTCGTACGGG
GACGGACGCTAG

Upstream 100 bases:

>100_bases
TGCCGCGCCTCGCGGCGACGCTGACAACATGCCGAAAACGCAAGGGTTCTCGCCCGAAAGCCTGATTTCGCAGTTCACCC
GCTGCGACGCAGGCTGGTGT

Downstream 100 bases:

>100_bases
CGAGACGGCAGGCGCGGCGAAAGCCCCGCGCATTGGCCGGCGCGCCGACTTCGGGTTGCGCGGCGGGCGTACCTTCGAGC
TGGCCGGACGGGGACATGCG

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWL
FLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQI
KPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAA
PARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIE
TPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYG
DGR

Sequences:

>Translated_403_residues
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWL
FLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQI
KPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAA
PARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIE
TPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYG
DGR
>Mature_403_residues
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWL
FLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQI
KPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAA
PARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIE
TPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYG
DGR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=231, Percent_Identity=25.5411255411255, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=28.9915966386555, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788849, Length=230, Percent_Identity=25.2173913043478, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=25.8474576271186, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081921, Length=231, Percent_Identity=24.6753246753247, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=24.8927038626609, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082096, Length=221, Percent_Identity=26.6968325791855, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081980, Length=226, Percent_Identity=24.7787610619469, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1788502, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 44373; Mature: 44373

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEHHHH
LTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
PSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASD
CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHH
AHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAA
HHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHCC
PARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIV
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHH
RRVFVAEANGEQVEPSVAIETPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVA
HHHHEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEE
LMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
EECCCCCCCCCCHHHHHHHHHEECCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEHHHH
LTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
PSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASD
CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHH
AHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAA
HHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHCC
PARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIV
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHH
RRVFVAEANGEQVEPSVAIETPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVA
HHHHEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEE
LMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
EECCCCCCCCCCHHHHHHHHHEECCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]