| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126453061
Identifier: 126453061
GI number: 126453061
Start: 137082
End: 137957
Strand: Direct
Name: 126453061
Synonym: BURPS1106A_0142
Alternate gene names: NA
Gene position: 137082-137957 (Clockwise)
Preceding gene: 126452138
Following gene: 126451629
Centisome position: 3.44
GC content: 67.47
Gene sequence:
>876_bases ATGAGAAAGACGACCGTTGCCGTTACGCAGATGGCTTGCGACTGGAACGTCGACGCGAACCTGTCGCGCGCCGAGCGACT CGTGCGCGACGCGGCCGCGCGCGGCGCGCAGATCGTGCTGCTGCAGGAATTGTTCGAGACGCCGTATTTCTGCATCGACC AGCACCCCGCGCATCTCGCGCTCGCGCAGCCGTATGAAGGCCATCCGTGGCTTATGCGCTTCGCGTCGCTCGCGCGCGAG CTCGGCGTCGTGCTGCCGGTGAGCTTCTTCGAGCGCGCCGGCCAGACGCAGTTCAACTCGGTCGCGATCTTCGACGCGGA CGGCCGCGCGCTCGGCATCTATCGAAAGACGCACATTCCGGACGGCCCGGGCTACACGGAGAAATACTATTTCACGCCGG GCGACACGGGCTTTCGCGTATGGGATACCGCATACGGGCGGATCGGCGTCGGGATCTGCTGGGATCAGTGGTTTCCGGAG TGCGCGCGGGCAATGGCGCTCGCGGGCGCGGAGCTGTTGCTGTACCCGAGCGCGATCGGCAGCGAGCCGCACGATGCGTC GATCGATTCGCGCGCGCATTGGCGCAACGCGCAGCGCGGGCATGCGGCCGCGAACCTGATGCCGGTTGCCGCGAGTAATC GGGTCGGCGTCGAGCGCGGCGCATCGGGCGAGATCGTGTTTTACGGCAGCTCGTTCATCGCGGGCGCGGACGGCGAGATG ATCGTCGAATGCGATCGGCACGACGAGGCGATCGCGACGGCCGAATTCGATCTCGATGCGCTCGCGTATCGGCGGCGCGG CTGGGGCGTGTTCCGGGATCGGCGGCCGGAGTGTTATCGGGCGTTGAGCGAGGGCGCGGCGGATCGCGTGCGATGA
Upstream 100 bases:
>100_bases CAGTATCCGCTCGGCGAAGGCGAGCGCGCCGCGGTGAAGGCCGCCCGCGCCGCGCTGGCGCCGTATTGGCCCACGCTGCA TCGATCCTGAGGCGCGCACA
Downstream 100 bases:
>100_bases CGCGGCGAGCGGGCGGCGGGAGCGCGCTCGCGCGTTGCCGATTGCGTCGGCGAAAAAAGCCGCGCATGTCCGCGCGGCGA ATCCGTCTGCGCTCGAGGGC
Product: carbon-nitrogen family hydrolase
Products: NA
Alternate protein names: D-N-alpha-carbamilase [H]
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARE LGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPE CARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEM IVECDRHDEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
Sequences:
>Translated_291_residues MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARE LGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPE CARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEM IVECDRHDEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR >Mature_291_residues MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARE LGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPE CARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEM IVECDRHDEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
Specific function: The enzyme catalyzes the hydrolysis of N-carbamoyl-D- amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Homo sapiens, GI9910460, Length=285, Percent_Identity=31.9298245614035, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI297632348, Length=292, Percent_Identity=33.9041095890411, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI5031947, Length=292, Percent_Identity=33.9041095890411, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI297632350, Length=292, Percent_Identity=33.9041095890411, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI297632346, Length=203, Percent_Identity=35.9605911330049, Blast_Score=95, Evalue=9e-20, Organism=Homo sapiens, GI7706509, Length=287, Percent_Identity=28.9198606271777, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17533173, Length=281, Percent_Identity=29.8932384341637, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17556280, Length=284, Percent_Identity=26.056338028169, Blast_Score=85, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6323383, Length=289, Percent_Identity=27.3356401384083, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6322335, Length=230, Percent_Identity=26.9565217391304, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358471, Length=298, Percent_Identity=29.1946308724832, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI17933642, Length=280, Percent_Identity=27.8571428571429, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355835, Length=271, Percent_Identity=24.3542435424354, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: =3.5.1.77 [H]
Molecular weight: Translated: 32295; Mature: 32295
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLA CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEECCCCCEEE LAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIP ECCCCCCCHHHHHHHHHHHHCCEECCHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCC DGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIG CCCCCCCEEEECCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECHHHC SEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEM CCCCCCCCCCHHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCE IVECDRHDEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR EEEECCCCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHCCC >Mature Secondary Structure MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLA CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEECCCCCEEE LAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIP ECCCCCCCHHHHHHHHHHHHCCEECCHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCC DGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIG CCCCCCCEEEECCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECHHHC SEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEM CCCCCCCCCCHHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCE IVECDRHDEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR EEEECCCCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9648217; 10903946 [H]