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The map label for this gene is araC [C]

Identifier: 126453049

GI number: 126453049

Start: 3119985

End: 3120932

Strand: Direct

Name: araC [C]

Synonym: BURPS1106A_3203

Alternate gene names: 126453049

Gene position: 3119985-3120932 (Clockwise)

Preceding gene: 126454752

Following gene: 126455332

Centisome position: 78.23

GC content: 71.1

Gene sequence:

>948_bases
ATGCACGCGCCTTCCCCGCCTCCGCTCGACGCCCGCCTGTCCGTGCCCGCCGCCGATTTCGTCGGCGGCGAAGTGCCGTT
CGGCCTGCAATCCGTCTGCCGGACGCTCGCCGAGGCGAACGCGAAGCTCGAGCGCTTCGCATGGCTCGGCGATCATCTCG
CGATCGCCGAATGGACGCGCGTCACCGACGAAAGCGAGACGGTGTACGCGCAGCCCGGACATCACACGCTATCGTGCTAC
CTGGACGGCGGCTACCGCACCGAGCGGCAAAAAATCGCGCGCTACGGCGCGCCGAGCCTGCTCTGCGCGCTGCCGGGCGA
CCACGAATCGCGCTGGTGGGTGCGCGGCGAGATGCACTTCGTGCACCTGTACTTTCTGCCCGAGCACTTCGCGCGGCGCG
CGGTGCGCGAGCTCGATCGCGAGCCGCGCGAGCTGAAGCTCGCCGATCGCACGTATTTCGAGGATGCGCGCGTCGCCGCG
CTATGCCGCTCGCTCGCGCTCGAGCGCTGGGACGACGCCGATGGCCGGCTGCGCGTGAACGAAACCGCGCACGAGGTGCT
GAGCCTCCTGCTGCGCGGGCAGAGCATGACGGGCGCCGGCGCGCCGTTCAAGGGCGGCCTCGCGCCCGCCGTGCGCCGGC
GCGTGCGCGACTACATCGACACGTACCTCGCGCACCCGATGACGCTCGGCGAGCTCGCGCAGATCGCGTCGCTGTCCGAA
TACCATTTCTCGAGGATGTTCAGCGTATCGTTCGGCCGCGCGCCGCACGCGTGGATCGCCGAGCAGCGCCTCGCCCGCGC
GCGCACGCTGCTGCGCACGACATCGCTACCGCTCGCGCAGGTCGCCGCGCAATGCGGCTATGCGAACGCCGTGCATCTCA
GCCACCGCTTTCGCGACACGCACGGCGCGACGCCGGGCGCGTACCGCCGCGCGATGCAGGCCGCCTAG

Upstream 100 bases:

>100_bases
CGACTATGCCGCGGCGCACCGGGCGCCGATTGTCTGGAATTGCGGTCTTTTGCGGCCGGCCGGGCCGCGCACGCGCGCGC
GCCTTTATACTCGCACCATC

Downstream 100 bases:

>100_bases
CAGCCCGCGCATCGCGCGGGCGCGTCAAGCGGCGCGCCCCGACAGCGCCTGCTCGAGCGCGGCGACGCCGGCCGGCAGAT
CGACCGCCACCTTCAGGTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcription Regulator AraC Family; AraC-Family Transcriptional Regulator; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; Transcriptional Regulator AraC; Transcriptional Regulator AraC-Type; HTH-Type Transcriptional Regulator; Transcriptional Activator; AraC Family Regulatory Protein; AraC Family Transcription Regulator; HTH-Type Transcriptional Regulator ChbR; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein; AraC Family Regulatory Helix-Turn-Helix; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MHAPSPPPLDARLSVPAADFVGGEVPFGLQSVCRTLAEANAKLERFAWLGDHLAIAEWTRVTDESETVYAQPGHHTLSCY
LDGGYRTERQKIARYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFARRAVRELDREPRELKLADRTYFEDARVAA
LCRSLALERWDDADGRLRVNETAHEVLSLLLRGQSMTGAGAPFKGGLAPAVRRRVRDYIDTYLAHPMTLGELAQIASLSE
YHFSRMFSVSFGRAPHAWIAEQRLARARTLLRTTSLPLAQVAAQCGYANAVHLSHRFRDTHGATPGAYRRAMQAA

Sequences:

>Translated_315_residues
MHAPSPPPLDARLSVPAADFVGGEVPFGLQSVCRTLAEANAKLERFAWLGDHLAIAEWTRVTDESETVYAQPGHHTLSCY
LDGGYRTERQKIARYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFARRAVRELDREPRELKLADRTYFEDARVAA
LCRSLALERWDDADGRLRVNETAHEVLSLLLRGQSMTGAGAPFKGGLAPAVRRRVRDYIDTYLAHPMTLGELAQIASLSE
YHFSRMFSVSFGRAPHAWIAEQRLARARTLLRTTSLPLAQVAAQCGYANAVHLSHRFRDTHGATPGAYRRAMQAA
>Mature_315_residues
MHAPSPPPLDARLSVPAADFVGGEVPFGLQSVCRTLAEANAKLERFAWLGDHLAIAEWTRVTDESETVYAQPGHHTLSCY
LDGGYRTERQKIARYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFARRAVRELDREPRELKLADRTYFEDARVAA
LCRSLALERWDDADGRLRVNETAHEVLSLLLRGQSMTGAGAPFKGGLAPAVRRRVRDYIDTYLAHPMTLGELAQIASLSE
YHFSRMFSVSFGRAPHAWIAEQRLARARTLLRTTSLPLAQVAAQCGYANAVHLSHRFRDTHGATPGAYRRAMQAA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35310; Mature: 35310

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPSPPPLDARLSVPAADFVGGEVPFGLQSVCRTLAEANAKLERFAWLGDHLAIAEWTR
CCCCCCCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VTDESETVYAQPGHHTLSCYLDGGYRTERQKIARYGAPSLLCALPGDHESRWWVRGEMHF
CCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEE
VHLYFLPEHFARRAVRELDREPRELKLADRTYFEDARVAALCRSLALERWDDADGRLRVN
EEEEECHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
ETAHEVLSLLLRGQSMTGAGAPFKGGLAPAVRRRVRDYIDTYLAHPMTLGELAQIASLSE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YHFSRMFSVSFGRAPHAWIAEQRLARARTLLRTTSLPLAQVAAQCGYANAVHLSHRFRDT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEHHHHHHHHC
HGATPGAYRRAMQAA
CCCCCHHHHHHHHCC
>Mature Secondary Structure
MHAPSPPPLDARLSVPAADFVGGEVPFGLQSVCRTLAEANAKLERFAWLGDHLAIAEWTR
CCCCCCCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VTDESETVYAQPGHHTLSCYLDGGYRTERQKIARYGAPSLLCALPGDHESRWWVRGEMHF
CCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEE
VHLYFLPEHFARRAVRELDREPRELKLADRTYFEDARVAALCRSLALERWDDADGRLRVN
EEEEECHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
ETAHEVLSLLLRGQSMTGAGAPFKGGLAPAVRRRVRDYIDTYLAHPMTLGELAQIASLSE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YHFSRMFSVSFGRAPHAWIAEQRLARARTLLRTTSLPLAQVAAQCGYANAVHLSHRFRDT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEHHHHHHHHC
HGATPGAYRRAMQAA
CCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA