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The map label for this gene is rfbB [C]

Identifier: 126453040

GI number: 126453040

Start: 3055999

End: 3057069

Strand: Reverse

Name: rfbB [C]

Synonym: BURPS1106A_3134

Alternate gene names: 126453040

Gene position: 3057069-3055999 (Counterclockwise)

Preceding gene: 126454457

Following gene: 126452157

Centisome position: 76.65

GC content: 60.78

Gene sequence:

>1071_bases
TTGGTTGACGGGAAAAAGATCCTCGTGACCGGTGGGGCTGGCTTTATCGGCTGCGCGATATCGGAGCGACTCGCAGCGCG
TGCAAGCCGCTACGTCGTAATGGACAACTTGCATCCGCAGATCCATGCGAGCGCGGTTCGTCCTGGCGCGCTTCACGAGA
AAGCGGAACTCGTCGTTGCCGACGTCACGGACGCCGGTGCATGGGATGCGCTGCTGAGCGATTTTCAACCGGAAATCATC
ATACATCTGGCCGCCGAAACGGGCACGGGCCAATCGCTGACGGAAGCGAGTCGGCATGCGCTCGTCAACGTCGTCGGCAC
CACGCGGCTGACGGACGCGCTCGTCAAGCACGGCATCGTGGTCGAGCACATTCTGCTGACGAGCAGCCGCGCGGTCTATG
GCGAAGGGGCATGGCAGAAGGACGATGGCACGATCGTTTATCCCGGCCAACGCGGGCGCGCCCAGCTCGAGGCTGCGCAA
TGGGATTTCCCGGGGATGACGATGCTGCCTTCGCGTGCGGACCGTACCGAGCCGCGGCCGACGAGCGTCTATGGTGCAAC
GAAGCTCGCGCAGGAACACGTACTGCGTGCATGGTCGCTCGCAACGAAAACGCCGCTGTCGATTTTGCGTCTGCAGAACG
TTTATGGCCCGGGTCAATCGTTGACTAACTCCTATACCGGCATCGTCGCGCTTTTCTCTCGGCTTGCTCGCGAAAAGAAG
GTGATTCCGCTCTATGAAGACGGCAATGTGACGCGCGATTTTGTCAGTATCGACGATGTGGCGGACGCCATTGTCGCGAC
GTTGGTGCGCACGCCGGAAGCACTCTCTCTTTTCGATATCGGCTCCGGACAGGCGACGAGCATTCTCGATATGGCTCGAA
TCATCGCGGCGCATTACGGCGCTCCCGAGCCGCAGATCAACGGTGCATTCCGCGACGGAGATGTACGACACGCGGCGTGC
GACTTGAGCGAATCGTTGGCGAACCTTGGATGGAAGCCGCAGTGGTCGCTCAAACGCGGGATCGGCGAATTGCAGACCTG
GATCGCGCAAGAGCTTGATCGCAAGAACTAG

Upstream 100 bases:

>100_bases
TGGCGCTGAAGGATTGGGGGCCCGGACAAGGATGGAAGTACTGTTTGGCTAGATTGACTATGAAGAAAGAGGGAGTGTGA
TGAGCGACGTGAATGCAAGC

Downstream 100 bases:

>100_bases
TCATACATCAGAGGTTACAAGTGCCACTGCACGATACGACAATCACCGGTCCCGCGTCCTTGCGGATTCAGTCGGTCCTG
TATAACAACAGTCAGCAGCA

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLSDFQPEII
IHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQ
WDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKK
VIPLYEDGNVTRDFVSIDDVADAIVATLVRTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAAC
DLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN

Sequences:

>Translated_356_residues
MVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLSDFQPEII
IHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQ
WDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKK
VIPLYEDGNVTRDFVSIDDVADAIVATLVRTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAAC
DLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN
>Mature_356_residues
MVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLSDFQPEII
IHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQ
WDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKK
VIPLYEDGNVTRDFVSIDDVADAIVATLVRTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAAC
DLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI56237023, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI56118217, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI189083684, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1788353, Length=361, Percent_Identity=27.1468144044321, Blast_Score=104, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI115532424, Length=351, Percent_Identity=21.6524216524217, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319493, Length=369, Percent_Identity=23.5772357723577, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 38489; Mature: 38489

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVA
CCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCCCCCCEEEEE
DVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIV
ECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRP
HHHHHHHCCCEEECCCCEECCCCEEEECCCCCCCHHHHHCCCCCCCEECCCCCCCCCCCC
TSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
VIPLYEDGNVTRDFVSIDDVADAIVATLVRTPEALSLFDIGSGQATSILDMARIIAAHYG
CEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
APEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVA
CCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCCCCCCEEEEE
DVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIV
ECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRP
HHHHHHHCCCEEECCCCEECCCCEEEECCCCCCCHHHHHCCCCCCCEECCCCCCCCCCCC
TSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
VIPLYEDGNVTRDFVSIDDVADAIVATLVRTPEALSLFDIGSGQATSILDMARIIAAHYG
CEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
APEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]