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The map label for this gene is hofQ [C]

Identifier: 126453026

GI number: 126453026

Start: 1840970

End: 1842418

Strand: Direct

Name: hofQ [C]

Synonym: BURPS1106A_1885

Alternate gene names: 126453026

Gene position: 1840970-1842418 (Clockwise)

Preceding gene: 126452162

Following gene: 126452011

Centisome position: 46.16

GC content: 70.95

Gene sequence:

>1449_bases
ATGTGGAGTGTGATCGACGCGATCGGCAAGCGGCGGCAAGCCGCATCGGCATCGCCGCGCGCGCGGGCGTTCGCGGCGGC
GCGGCGCGCGGCCGCCGCGGCGTTGTGGTGGCTCGCGCTCGCGCTGGGCATGGCGGTGGCGCCGAGATTCGCCCGCGCGG
CGGACCTCGGCCCGGTGCTGGCCGTGCCCGCCGGCGGCGGCGAGATGGTGAAGCTGCCGGCGCCGGCGGTCGCGGTGTTC
GTCGCGGACCCGGACGTCGCCGACGTGCACGTGCCGACGCCGCAGGCGGTGTTCGTGCTCGGCAAGAAAGCCGGCACGAC
GACGCTCTTCGCGCTCGGCGCGAACAACCGGACGATCCTGCGCGAGACGGTCGTCGTCGATGTCGATACGCCGTCGCTGC
AGCGCATTCTCGATGCGCGCTTTCCGCAACTGCGCCTGACGCTCGCGGGCGCGCCGGGCTCGCTGATGGTGAGCGGCCGG
GTGCCGAGCGCGGCGGACGCGGACGCCGTCGTGCAGACGCTCAAGCCGTACCTGCGCCAGCAGGAAGCGCTCGTCAACCG
GCTCACGCTCGCGCGGCCGATCCAGGTGCACCTGCGCGTGCGCATCACCGAGGTCGACCGCAACATCACGCAGCAGCTCG
GCATCAACTGGAGCGCGCTCGGCGCGAGCGGCAACTTCGTCGGCGGCCTGTTCAACGGGCGCACGCTGTTCGACACGGCG
TCGAAGGCGTTCGATCTGTCGCCGTCGGGCGCGTTCTCGGTGGTGGGCGGTTTTCACACGTCGCGCTACTCGATCGACGG
CGTGCTCGACGCGCTCGATCAGGAAGGCCTCATCACGATGCTCGCCGAGCCGAACCTGACCGCGATCTCCGGCCAGACCG
CGAGCTTCCTCGCGGGCGGCGAGTTTCCGATTCCGGTCGCGCAGGACACGACGGGCGCGATCACGATCCAGTTCAAGCCA
TATGGCGTGTCGCTCGACTTCACGCCGACCGTGCTCGCCGACAACCGGATCAGCCTCAAGGTGCGCCCGGAGGTGAGCGA
GATCGATCCGACCAACAGCGTGACGACGGGCAGCATCAAGGTGCCGGCGCTGACGGTGCGCCGCGTCGACACGACGGTCG
AGCTGTCGAGCGGGCAGAGCTTCGCGATCGGCGGGCTCCTGCAGAGCAAGAGCAGCGACGTGCTCGCCGAGCTGCCGGGC
CTCGCGCGGCTGCCCGTGCTCGGCAAGCTGTTCTCGTCGCGCAACTACCTGAACGACAAGACCGAGGTCGTCGTGATCGT
CACGCCCTACATCGTGCAGCCGGCGAACCCGGGCGAGCTGCGCGACGCGCTCGACGACGTCACGCGCCCGAGCAGCGACA
TCGAGTTCGTGCTGCAGCGCTCGCTCGGCATCGATCCGCTCGGCGGCGATGCGCCGCGGCTCGCGGGCCCGGCGGGGTTC
GTCTACTGA

Upstream 100 bases:

>100_bases
ATTCCGACGCTGCCGTCGCTGCCGGGAGCGGCCGCGCCGCCCGCCGGCGCGCGGCCCGCGGCGTGAAGACGATGTCGATC
GATCAGGAGGACGAGCGCAA

Downstream 100 bases:

>100_bases
CGACGGAAGACAAGAGGGACACGGAGGCATTCGATGGCGATTCGATCGGAACACACCACGCGCCGGCGCGCGTCGCGCGC
GGTGGCCGCGTGCGCGGCGC

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MWSVIDAIGKRRQAASASPRARAFAAARRAAAAALWWLALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVF
VADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGR
VPSAADADAVVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGLFNGRTLFDTA
SKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKP
YGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG
LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGGDAPRLAGPAGF
VY

Sequences:

>Translated_482_residues
MWSVIDAIGKRRQAASASPRARAFAAARRAAAAALWWLALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVF
VADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGR
VPSAADADAVVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGLFNGRTLFDTA
SKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKP
YGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG
LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGGDAPRLAGPAGF
VY
>Mature_482_residues
MWSVIDAIGKRRQAASASPRARAFAAARRAAAAALWWLALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVF
VADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGR
VPSAADADAVVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGLFNGRTLFDTA
SKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKP
YGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG
LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGGDAPRLAGPAGF
VY

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=380, Percent_Identity=28.4210526315789, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082242, Length=460, Percent_Identity=23.695652173913, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50756; Mature: 50756

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSVIDAIGKRRQAASASPRARAFAAARRAAAAALWWLALALGMAVAPRFARAADLGPVL
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
AVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTIL
EEECCCCCEEEECCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
RETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQ
EEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGLFNGRTLFDTA
HHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEECCC
SKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGG
CHHEECCCCCCEEEEECCCCCCEEHHHHHHHCCCCCEEEEEECCCEEEECCCCEEEEECC
EFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIK
CCCCCCCCCCCCEEEEEEEECEEEECCCCEEEECCEEEEEECCCHHHCCCCCCEEECEEE
VPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRNYLNDK
CCEEEEEEECEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCC
TEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGGDAPRLAGPAGF
CCEEEEEECEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VY
CC
>Mature Secondary Structure
MWSVIDAIGKRRQAASASPRARAFAAARRAAAAALWWLALALGMAVAPRFARAADLGPVL
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
AVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTIL
EEECCCCCEEEECCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
RETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQ
EEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGLFNGRTLFDTA
HHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEECCC
SKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGG
CHHEECCCCCCEEEEECCCCCCEEHHHHHHHCCCCCEEEEEECCCEEEECCCCEEEEECC
EFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIK
CCCCCCCCCCCCEEEEEEEECEEEECCCCEEEECCEEEEEECCCHHHCCCCCCEEECEEE
VPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRNYLNDK
CCEEEEEEECEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCC
TEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGGDAPRLAGPAGF
CCEEEEEECEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]