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The map label for this gene is yecS [H]

Identifier: 126452898

GI number: 126452898

Start: 1786343

End: 1787002

Strand: Reverse

Name: yecS [H]

Synonym: BURPS1106A_1823

Alternate gene names: 126452898

Gene position: 1787002-1786343 (Counterclockwise)

Preceding gene: 126455413

Following gene: 126454875

Centisome position: 44.8

GC content: 67.88

Gene sequence:

>660_bases
ATGCCGATCACTTCCCTCCTCGCCCAATCGCTCCCGGTCCTGCTCCAGGGCGCGCTCCTGACCGTCAAGTTCGCCGTGCT
GTCGATGCTGTTCGGGCTCGTCGGCGCCGTCGCGCTCGCGCTGATGGGCATCGGCCGCAGCCGGGTGCTGGCCGGCCTCG
CTCGCGCGTACGTGAGCGTGATGCGCGGCACGCCGCTCCTCGTGCAGATCTTCGTCGTCTATTACGGATTGCCAAGCCTC
GGCGTGTCGCTCGATCCGACGCCCGCCGGCGTGATCGCGCTGTCCGCGAACGTCGCCGCTTACATGTCCGAAAGCATGCG
CGGCGCGATCAACGGGATCGACAAGGGGCAATGGCTCGCCGCGTACAGCCTCGGGCTGTCGTGGCGGCAGACGCTGCGCT
ACGTGATCGGGCCGCAGGCGCTGCGCATCGCGGTGCCGAGCCTGTCGAACAGCCTCATCAGCCTGATCAAGGACACGTCG
CTCGTGTCGGTGATCACCGTCACCGAGCTGCTGCGCAGCGCGCAGGAAATCATCGCGTCGACCTATCAGCCGTTGCCGCT
GTATCTCGCCGCGGCGGCCGTCTACTGGGTGCTGTGCCAGATCCTCGAATGGGTGCAGCGCTGGTACGAGCGGCGGCTCG
CGTTGCCGAGCCGGCACTGA

Upstream 100 bases:

>100_bases
CGACATCCGGCGGCGCGCGAGGGCGGCATCCGCAACGGTGCCGCCCTTGGCATTGCGCGCCCGGTTTATGATTGCGCTTT
CGCGTACGCCCCCGCTTCAC

Downstream 100 bases:

>100_bases
ACGGGGGCCGCGCGACGCGGGCGCCGCGTCATCGGCGGGCCGGCGGCTCGCAGCGCGGGGGCAAGCCGCCCGACGATGCG
CGATGACGCGTGCCCACGCG

Product: His/Glu/Gln/Arg/opine amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPITSLLAQSLPVLLQGALLTVKFAVLSMLFGLVGAVALALMGIGRSRVLAGLARAYVSVMRGTPLLVQIFVVYYGLPSL
GVSLDPTPAGVIALSANVAAYMSESMRGAINGIDKGQWLAAYSLGLSWRQTLRYVIGPQALRIAVPSLSNSLISLIKDTS
LVSVITVTELLRSAQEIIASTYQPLPLYLAAAAVYWVLCQILEWVQRWYERRLALPSRH

Sequences:

>Translated_219_residues
MPITSLLAQSLPVLLQGALLTVKFAVLSMLFGLVGAVALALMGIGRSRVLAGLARAYVSVMRGTPLLVQIFVVYYGLPSL
GVSLDPTPAGVIALSANVAAYMSESMRGAINGIDKGQWLAAYSLGLSWRQTLRYVIGPQALRIAVPSLSNSLISLIKDTS
LVSVITVTELLRSAQEIIASTYQPLPLYLAAAAVYWVLCQILEWVQRWYERRLALPSRH
>Mature_218_residues
PITSLLAQSLPVLLQGALLTVKFAVLSMLFGLVGAVALALMGIGRSRVLAGLARAYVSVMRGTPLLVQIFVVYYGLPSLG
VSLDPTPAGVIALSANVAAYMSESMRGAINGIDKGQWLAAYSLGLSWRQTLRYVIGPQALRIAVPSLSNSLISLIKDTSL
VSVITVTELLRSAQEIIASTYQPLPLYLAAAAVYWVLCQILEWVQRWYERRLALPSRH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=214, Percent_Identity=47.6635514018692, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=38.9671361502347, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787086, Length=223, Percent_Identity=33.6322869955157, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788646, Length=222, Percent_Identity=29.2792792792793, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787087, Length=217, Percent_Identity=31.3364055299539, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=32.7014218009479, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=32.8638497652582, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI87082239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=195, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=31.547619047619, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23655; Mature: 23524

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITSLLAQSLPVLLQGALLTVKFAVLSMLFGLVGAVALALMGIGRSRVLAGLARAYVSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MRGTPLLVQIFVVYYGLPSLGVSLDPTPAGVIALSANVAAYMSESMRGAINGIDKGQWLA
HCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
AYSLGLSWRQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTELLRSAQEIIAS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYQPLPLYLAAAAVYWVLCQILEWVQRWYERRLALPSRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PITSLLAQSLPVLLQGALLTVKFAVLSMLFGLVGAVALALMGIGRSRVLAGLARAYVSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MRGTPLLVQIFVVYYGLPSLGVSLDPTPAGVIALSANVAAYMSESMRGAINGIDKGQWLA
HCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
AYSLGLSWRQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTELLRSAQEIIAS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYQPLPLYLAAAAVYWVLCQILEWVQRWYERRLALPSRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]