Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 126452647

GI number: 126452647

Start: 178620

End: 179564

Strand: Direct

Name: yqhC [H]

Synonym: BURPS1106A_0188

Alternate gene names: 126452647

Gene position: 178620-179564 (Clockwise)

Preceding gene: 126452249

Following gene: 126454885

Centisome position: 4.48

GC content: 70.26

Gene sequence:

>945_bases
ATGAGCTTCGAACCCCTTTTCGCCGACGGCGGCGCGCGCCTGCAGCGCCGCATCCTCGCGCTGTTCGGGCAGCTCGCGCC
GAACGAAGGCTATACGCACGCCGCGCTCGACGGCGTGCGCTTCATTCGCTCGAACCGGCCCGTGCCGCGGATGCCCGTGC
TGTACGACCCGAGCATCGTCGTCGTGTGCCAGGGGCGCAAGCGCGGCTATGTCGGCGAGCAGAGCTTCGTCTACGACGCC
CAGCAGTACCTCGTGCTGTCGGTGCCGCTGCCGTTCGAATGCGAGACGTTCGCGACGCCGGACGAGCCGTTTCTCGCCAT
TTCGATTCGCATCGATCTCGCGGTGATCGCCGAGCTCGCGATCCTGCTCGACGAGACGCACGGCGCGTCGGTCAGCGAGC
CGCGCGGCATCTATTCGACGCCGCTCGACGCGCCGCTCGCGGACGCGGTGCTGCGCCTGCTCGAGGCGCTTGCGTCGCCC
GCCGATACGCGCGTGCTCGGCCCGGCGATCATGCGCGAGATCGGCTATCGCGTGCTGACGGGCGCGCAGGGCGACGCGAT
TCGCGCGGCGCTCGCGCAGCAGCACCATTTCGGGCGCGTCGCGCGGGCGCTGCGGCGCATCCATGCGGACCTGAGCGGCG
AGCTCGACGTCGAGACGCTCGCGAGCGAGGCGGGGATGAGCCTTGCCGTGTTCCATGCGCAGTTCAAGAGCGTGACGGCG
ACCTCGCCGATGCAGTACGTGAAGGCGACGCGGCTCCATCATGCGCGGCTGATGATGGTGCAGGACGGGCTGAATGCGGG
AGCGGCGGCGGCGCGGGTCGGCTATGCGAGCGCGTCGCAGTTCAGTCGGGAGTTCAAGCGGCTGTTCGGGCGCAGTCCGA
GCGACGAAGTGCGCTGGGTGCAGGCGGGCGGCCGGCAGCCGGTCGCGCTCGAAGCGGGAGAGTGA

Upstream 100 bases:

>100_bases
GGTTTGCCTATTTCTCTTGAACTTGCGGCGCAGTGCGGAAAAAAGGCCAGGGCGATGCTAGATTGCAAGCCTGTTTCTCT
TGCAGTACGAAGGAAGTCCG

Downstream 100 bases:

>100_bases
TCGCGCGGGCGGCGCGCGACGGGCGGGGCGGGCGAACGCCCGGGCGTCCCGCGCGACGGGCATGGGGTGCCGATGCGACC
GCGGGCACGGGTGACCATCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSFEPLFADGGARLQRRILALFGQLAPNEGYTHAALDGVRFIRSNRPVPRMPVLYDPSIVVVCQGRKRGYVGEQSFVYDA
QQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASVSEPRGIYSTPLDAPLADAVLRLLEALASP
ADTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
TSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPVALEAGE

Sequences:

>Translated_314_residues
MSFEPLFADGGARLQRRILALFGQLAPNEGYTHAALDGVRFIRSNRPVPRMPVLYDPSIVVVCQGRKRGYVGEQSFVYDA
QQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASVSEPRGIYSTPLDAPLADAVLRLLEALASP
ADTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
TSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPVALEAGE
>Mature_313_residues
SFEPLFADGGARLQRRILALFGQLAPNEGYTHAALDGVRFIRSNRPVPRMPVLYDPSIVVVCQGRKRGYVGEQSFVYDAQ
QYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASVSEPRGIYSTPLDAPLADAVLRLLEALASPA
DTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTAT
SPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPVALEAGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=44.8398576512456, Blast_Score=249, Evalue=1e-67,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34123; Mature: 33991

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFEPLFADGGARLQRRILALFGQLAPNEGYTHAALDGVRFIRSNRPVPRMPVLYDPSIV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEE
VVCQGRKRGYVGEQSFVYDAQQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELA
EEECCCCCCCCCCHHHHEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
ILLDETHGASVSEPRGIYSTPLDAPLADAVLRLLEALASPADTRVLGPAIMREIGYRVLT
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEE
GAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
TSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWV
CCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHE
QAGGRQPVALEAGE
ECCCCCCEEEECCC
>Mature Secondary Structure 
SFEPLFADGGARLQRRILALFGQLAPNEGYTHAALDGVRFIRSNRPVPRMPVLYDPSIV
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEE
VVCQGRKRGYVGEQSFVYDAQQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELA
EEECCCCCCCCCCHHHHEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
ILLDETHGASVSEPRGIYSTPLDAPLADAVLRLLEALASPADTRVLGPAIMREIGYRVLT
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEE
GAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
TSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWV
CCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHE
QAGGRQPVALEAGE
ECCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]