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The map label for this gene is zraR [H]

Identifier: 126452610

GI number: 126452610

Start: 2155755

End: 2157164

Strand: Reverse

Name: zraR [H]

Synonym: BURPS1106A_2171

Alternate gene names: 126452610

Gene position: 2157164-2155755 (Counterclockwise)

Preceding gene: 126455120

Following gene: 126455257

Centisome position: 54.09

GC content: 71.06

Gene sequence:

>1410_bases
ATGGCAGAATTGGCAGCCAACGCGGCCGCGGGCCGCGCAGCCGGAGCTCCATGCATGAATCAGCGCGACGCCATTCCGAT
CGTTCCCATTTCGCCGCCCGACGTGGGCGTGCTCGTGTCGTACCTCGAGCAGGATCCGCAGCCGATGATCGTGCTCGATC
CGTCGTACCGGATCCTCGCGGCGAACGCCGCGTATCAGCGGCAGTTCGGCATCGCCGGCGAGGCGCACGTCGGGCGGCGC
TGCTACCAGGTCTCGCATCACTACGACATGCCGTGCGACCAGGCGGGCGAGCATTGCCCGATGAAGCAGGCGGGCGAATC
GCGCGGCCTGAACCGCGTGCTGCACATCCATCACACGCCGCGCGGGCCCGAGCACGTCGATGTCGAGCTGCGGCCGATCT
TCGATGCGCGCGGCGCGGTGATCGCATACGTCGAGCGGCTGACGACCGTGCGCAGCGCGTCGGCGAAGCCGAGCGGCGAG
GGGCTCGTTGGCGGCTCGGACGCGTTCAACGCGGCGCTGTCCGCGTTGCAGCGGGTCGCGCCTTCGATGCTGCCCGTGCT
GCTGCTCGGCGAATCGGGCACGGGCAAGGAGCTGTTCGCGCGTGCGTTGCACGAGGCGAGCGCGCGTGCGATGGGGCCGT
TCGTCGTCGTCGATTGCTCGGGGATTGCCGAGACGCTGTTCGAAAGCGAGCTGTTCGGCTACGAGAAAGGCGCGTTCACC
GGCGCGAGCGCGCGCAAGCCCGGCCTCGTCGAGACCGCGCAGGGCGGCACGCTGTTTCTCGACGAGATCGGCGACGTGCC
GCCGCCGATGCAGGTGAAGCTGCTGCGCCTCATCGAATCGGGGACGTTCCGGCGGGTAGGCGGCGTCGAGGTGCTGCGCG
CGGATTTCCGGCTCGTCGCGGCGACTCACAAGCCGCTCAAGGAGATGATCGGCGACGGCAGGTTCCGGCAGGACCTGTAC
TACCGGATCAGCGCGTATCCGATTCCGCTGCCCGCCGTGCGCGAGCGCCCGGGCGACATTCCGCTCCTCGTCGATTCGAT
CCTGCGCCGGATCGCGGCGCTCGTGCCCGCAGCCGGGCAGCGCTTCGCGGTCGCGCCGGAGGCGCTCGCGCGGCTCGAAG
CGTATGCGTGGCCGGGCAACATCCGCGAGCTGCGCAACGTGCTCGATCGCGCGTGCCTGTTCGCCGACGACGGCGTGATT
CGCGTCGAGCATCTGCCCGACGAAGTCGCGTGCGCGGGCGAAGCGCCGGCGGGGCCCGGCGCGCCGGCGAAGCTGTCCGA
CGACGAGCTCGCGCGGATCGCGCGCGCGTTCGACGGCACGCGGCGCGCGCTCGCCGAGCGCGTCGGGATGAGCGAGCGCA
CGCTGTACCGGCGGTTGCGCGCGCTGGGGATCGCGACGCGGGAGGCGTGA

Upstream 100 bases:

>100_bases
CAGGTACTTGATTCAAATCGTGTTTTGTTCCTCCGTCGCGCATCGCGCACCGCCGGGGCGGCGAGATTCGTCCCGCTTGA
CTGCCAAGGATGGCAGTTGA

Downstream 100 bases:

>100_bases
GGCTTGACCCGTGAGGCGTGGGCGGACGACGGCGAGCGGGCGCCGGGCGGTGCGCCGCGCGTGAATGGCATGGACGAGAG
GCCGACGGGACGGGAAGACG

Product: putative sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MAELAANAAAGRAAGAPCMNQRDAIPIVPISPPDVGVLVSYLEQDPQPMIVLDPSYRILAANAAYQRQFGIAGEAHVGRR
CYQVSHHYDMPCDQAGEHCPMKQAGESRGLNRVLHIHHTPRGPEHVDVELRPIFDARGAVIAYVERLTTVRSASAKPSGE
GLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFT
GASARKPGLVETAQGGTLFLDEIGDVPPPMQVKLLRLIESGTFRRVGGVEVLRADFRLVAATHKPLKEMIGDGRFRQDLY
YRISAYPIPLPAVRERPGDIPLLVDSILRRIAALVPAAGQRFAVAPEALARLEAYAWPGNIRELRNVLDRACLFADDGVI
RVEHLPDEVACAGEAPAGPGAPAKLSDDELARIARAFDGTRRALAERVGMSERTLYRRLRALGIATREA

Sequences:

>Translated_469_residues
MAELAANAAAGRAAGAPCMNQRDAIPIVPISPPDVGVLVSYLEQDPQPMIVLDPSYRILAANAAYQRQFGIAGEAHVGRR
CYQVSHHYDMPCDQAGEHCPMKQAGESRGLNRVLHIHHTPRGPEHVDVELRPIFDARGAVIAYVERLTTVRSASAKPSGE
GLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFT
GASARKPGLVETAQGGTLFLDEIGDVPPPMQVKLLRLIESGTFRRVGGVEVLRADFRLVAATHKPLKEMIGDGRFRQDLY
YRISAYPIPLPAVRERPGDIPLLVDSILRRIAALVPAAGQRFAVAPEALARLEAYAWPGNIRELRNVLDRACLFADDGVI
RVEHLPDEVACAGEAPAGPGAPAKLSDDELARIARAFDGTRRALAERVGMSERTLYRRLRALGIATREA
>Mature_468_residues
AELAANAAAGRAAGAPCMNQRDAIPIVPISPPDVGVLVSYLEQDPQPMIVLDPSYRILAANAAYQRQFGIAGEAHVGRRC
YQVSHHYDMPCDQAGEHCPMKQAGESRGLNRVLHIHHTPRGPEHVDVELRPIFDARGAVIAYVERLTTVRSASAKPSGEG
LVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTG
ASARKPGLVETAQGGTLFLDEIGDVPPPMQVKLLRLIESGTFRRVGGVEVLRADFRLVAATHKPLKEMIGDGRFRQDLYY
RISAYPIPLPAVRERPGDIPLLVDSILRRIAALVPAAGQRFAVAPEALARLEAYAWPGNIRELRNVLDRACLFADDGVIR
VEHLPDEVACAGEAPAGPGAPAKLSDDELARIARAFDGTRRALAERVGMSERTLYRRLRALGIATREA

Specific function: Member of the two-component regulatory system zraS/zraR. When activated by zraS it acts in conjunction with sigma-54 to regulate the expression of zraP. Positively autoregulates the expression of the zraSR operon [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789087, Length=331, Percent_Identity=41.0876132930514, Blast_Score=238, Evalue=6e-64,
Organism=Escherichia coli, GI1790437, Length=303, Percent_Identity=44.5544554455446, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1788550, Length=301, Percent_Identity=41.8604651162791, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1789233, Length=372, Percent_Identity=36.0215053763441, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI87082117, Length=326, Percent_Identity=38.9570552147239, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1788905, Length=283, Percent_Identity=39.9293286219081, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1790299, Length=366, Percent_Identity=35.792349726776, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1786524, Length=322, Percent_Identity=40.6832298136646, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87081872, Length=238, Percent_Identity=44.9579831932773, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI87082152, Length=256, Percent_Identity=40.625, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1787583, Length=448, Percent_Identity=31.9196428571429, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1789828, Length=307, Percent_Identity=34.8534201954397, Blast_Score=155, Evalue=6e-39,
Organism=Escherichia coli, GI87081858, Length=295, Percent_Identity=32.5423728813559, Blast_Score=150, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 50477; Mature: 50345

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELAANAAAGRAAGAPCMNQRDAIPIVPISPPDVGVLVSYLEQDPQPMIVLDPSYRILA
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCEEEE
ANAAYQRQFGIAGEAHVGRRCYQVSHHYDMPCDQAGEHCPMKQAGESRGLNRVLHIHHTP
CCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHCCCCEEEEEECCC
RGPEHVDVELRPIFDARGAVIAYVERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVA
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
PSMLPVLLLGESGTGKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFT
HHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCC
GASARKPGLVETAQGGTLFLDEIGDVPPPMQVKLLRLIESGTFRRVGGVEVLRADFRLVA
CCCCCCCCCEEECCCCEEEHHHHCCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
ATHKPLKEMIGDGRFRQDLYYRISAYPIPLPAVRERPGDIPLLVDSILRRIAALVPAAGQ
HHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
RFAVAPEALARLEAYAWPGNIRELRNVLDRACLFADDGVIRVEHLPDEVACAGEAPAGPG
EEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCHHHCCCCCCCCCC
APAKLSDDELARIARAFDGTRRALAERVGMSERTLYRRLRALGIATREA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
AELAANAAAGRAAGAPCMNQRDAIPIVPISPPDVGVLVSYLEQDPQPMIVLDPSYRILA
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCEEEE
ANAAYQRQFGIAGEAHVGRRCYQVSHHYDMPCDQAGEHCPMKQAGESRGLNRVLHIHHTP
CCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHCCCCEEEEEECCC
RGPEHVDVELRPIFDARGAVIAYVERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVA
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
PSMLPVLLLGESGTGKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFT
HHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCC
GASARKPGLVETAQGGTLFLDEIGDVPPPMQVKLLRLIESGTFRRVGGVEVLRADFRLVA
CCCCCCCCCEEECCCCEEEHHHHCCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
ATHKPLKEMIGDGRFRQDLYYRISAYPIPLPAVRERPGDIPLLVDSILRRIAALVPAAGQ
HHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
RFAVAPEALARLEAYAWPGNIRELRNVLDRACLFADDGVIRVEHLPDEVACAGEAPAGPG
EEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCHHHCCCCCCCCCC
APAKLSDDELARIARAFDGTRRALAERVGMSERTLYRRLRALGIATREA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11243806 [H]