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The map label for this gene is rsmE [H]

Identifier: 126452434

GI number: 126452434

Start: 3378467

End: 3379234

Strand: Direct

Name: rsmE [H]

Synonym: BURPS1106A_3472

Alternate gene names: 126452434

Gene position: 3378467-3379234 (Clockwise)

Preceding gene: 126451733

Following gene: 126452891

Centisome position: 84.71

GC content: 76.04

Gene sequence:

>768_bases
ATGAGCGGCGCCGCCACGACCGCGGCGGTGCCGCGCTTCTTCGTCGACGCGGCGTTGCGCGCCGACGCCACGCTGGCGCT
GCCGGCCGACGTCGCGCGTCACGCGCACGTGCTGCGGCTGCAGCCGGGCGACGCGCTCGCGCTGTTCGACGGCACGGGCG
GCCAGTATCGCGCGCGACTCGTCGAGATCGACAAGCGCGGCGCGCTCGCCCGGATCGATGCGTTCGAGCCCGCGGAAGCG
GAGCCGCCGTACCGCGTGACGCTCGCACAGGGCATCGCCGGCGGCGACAAGATGGATTGGGTGATCGAAAAGGCGGTCGA
GCTCGGCGTGGCGGCGGTTGTGCCGCTGTCGACCGCGCGCGGCGTCGTCAGGCTGTCGGGCGAGCGCGCGGACAAGCGCG
TGTCGCACTGGCGCGGCGTCGTGCGCGCGTCGTGCGAGCAGTGCGGCCGCAATCGCTTGCCGGAAATCGCGCCGGTGCGC
GGCTTCGATGCATGGCTCGACGCGCTGCCGGCCACGCCGGCCGACGGCGCACTGCGCTTGCTGCTGTCGCCGCGCGCGAG
CGTGCCGTTCGCATCGCTGCCCGCCGCGCCGCCCGCCGGCGACGTGACGCTGCTGATCGGCCCGGAAGGCGGGCTCGCGC
CCGACGAGGAACAAGCCGCGCGAGCGCGAGGCTTCGCCGCGCTGTCGCTCGGCCCGCGCGTGCTGCGCACCGAAACGGCG
GGCGCGGCGGTGCTCGCCGCGCTCGCGGCGCGCTGGGGCGGATGGTGA

Upstream 100 bases:

>100_bases
AATCGCTGAGCGCGCCGCAGGATCAGTTCTGGGGCGATCGCTTCGCGCAGATCGAGGATCTCGACGGCTACCGGTGGGCG
CTCGCGCGGCGCATCGGCGC

Downstream 100 bases:

>100_bases
CGGCGCGCGTCAATCGGCCGCGGGCGGCGGCGCCGCGGTAGCGCGCGTCGCGCCGAACACGGGCATGCCCGCGCGGCGCG
CAAACCGCGGCGCGCGAACG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSGAATTAAVPRFFVDAALRADATLALPADVARHAHVLRLQPGDALALFDGTGGQYRARLVEIDKRGALARIDAFEPAEA
EPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVR
GFDAWLDALPATPADGALRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA
GAAVLAALAARWGGW

Sequences:

>Translated_255_residues
MSGAATTAAVPRFFVDAALRADATLALPADVARHAHVLRLQPGDALALFDGTGGQYRARLVEIDKRGALARIDAFEPAEA
EPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVR
GFDAWLDALPATPADGALRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA
GAAVLAALAARWGGW
>Mature_254_residues
SGAATTAAVPRFFVDAALRADATLALPADVARHAHVLRLQPGDALALFDGTGGQYRARLVEIDKRGALARIDAFEPAEAE
PPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRG
FDAWLDALPATPADGALRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETAG
AAVLAALAARWGGW

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=245, Percent_Identity=39.1836734693878, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26568; Mature: 26436

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAATTAAVPRFFVDAALRADATLALPADVARHAHVLRLQPGDALALFDGTGGQYRARL
CCCCCHHHHHHHHHHHHHHHCCCEEECCHHHHHCCEEEEECCCCEEEEEECCCCCEEEEE
VEIDKRGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTAR
EEECCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCHHHEEEHHCCC
GVVRLSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRL
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEE
LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA
EECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCEEEECCCCEEEEECCC
GAAVLAALAARWGGW
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGAATTAAVPRFFVDAALRADATLALPADVARHAHVLRLQPGDALALFDGTGGQYRARL
CCCCHHHHHHHHHHHHHHHCCCEEECCHHHHHCCEEEEECCCCEEEEEECCCCCEEEEE
VEIDKRGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTAR
EEECCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCHHHEEEHHCCC
GVVRLSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRL
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEE
LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA
EECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCEEEECCCCEEEEECCC
GAAVLAALAARWGGW
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]