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The map label for this gene is ompW [H]

Identifier: 126452380

GI number: 126452380

Start: 3760268

End: 3761098

Strand: Direct

Name: ompW [H]

Synonym: BURPS1106A_3858

Alternate gene names: 126452380

Gene position: 3760268-3761098 (Clockwise)

Preceding gene: 126454448

Following gene: 126454719

Centisome position: 94.28

GC content: 65.94

Gene sequence:

>831_bases
ATGAGAAAAGCACTCTGCACGGCGCTCGGCGTCGCGGCGCTGACGCCGCTCGCCGCGCACGCGCAAAGCGCGGGCAGCAA
CGTCGTCACGCTCGGCTGGTTTCACGTGATGCCGCAGCAAAGCAGCACGCCGCTTACGACGAATGTCGCGCCGACGCCGA
TCAACACGCCGCTGCGTTTGCCGCCGTCGTTCACGTCGGCGGGCACCGGGCTTTCGACGAGCGGCGCGGACACCGTCGGC
CTGACCGTCAGCCACTTTCTGACCGACCACATCGCGGTTACCTCGGTGGCGGGCGTGCCGCCCGTCTTCAAGGTGTCCGG
CCACGGCACGATCACGCCGCCCGGCCCGGCCGGCGCGCTCGGCACGCAGAACATCGGGCTCGCCCAGGTCAATCCGATCG
TGAAGAGCGTGCGGCAGTGGAGCCCCGCCGTCGTATTCCAGTACTACTTCGCGCAAGCCACCGCGAAGTTCCGGCCGTTC
GTCGGCATCGGCGTGTCGTACAACTGGTTCAGCGATCTGCAACTGAACACGAACTTCATCAAGCAGACGCAGGACAACCT
CGGCGCGATTCTCGCCGCGGGCGCGGGCAAGCCGGGGGTCACGCAGGTATCGGCGAAGGCGTCGTCGTCGTGGCAGCCGG
TGTTCAATGCGGGCCTGTCGTACAACATCACCGATCATTGGGGGCTCGTCGCATCGGTCACGTACATCCCGCTGAAGACG
ACGTCGACGGTGACGATCAAGGCGGCCGACGGCACGACGCTCGCCGAGTCGAAATCGGATCTGAAGGCCGATCCGATCAT
CAGCTACGTGGCGGTGTCGTACAAGTTCTGA

Upstream 100 bases:

>100_bases
TTCACGGGCGGGGTGTTCGGCTTCCTCGACATGTCCAACTCGTCGTCGCCGTACTTCACGGTCGGCGCCTTCGTGCAGTA
ACCGACGCTCGGGAGGCCTT

Downstream 100 bases:

>100_bases
GGCTGAAGGACCGCCCGCGCGGGCCCTGCTCCGGGTTCGCGCGGGCAAAAAAAAAGCCCGCCTGAAGAGGCGGGCTGAAT
CCATATCAGAGGAGACATGG

Product: ompW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRKALCTALGVAALTPLAAHAQSAGSNVVTLGWFHVMPQQSSTPLTTNVAPTPINTPLRLPPSFTSAGTGLSTSGADTVG
LTVSHFLTDHIAVTSVAGVPPVFKVSGHGTITPPGPAGALGTQNIGLAQVNPIVKSVRQWSPAVVFQYYFAQATAKFRPF
VGIGVSYNWFSDLQLNTNFIKQTQDNLGAILAAGAGKPGVTQVSAKASSSWQPVFNAGLSYNITDHWGLVASVTYIPLKT
TSTVTIKAADGTTLAESKSDLKADPIISYVAVSYKF

Sequences:

>Translated_276_residues
MRKALCTALGVAALTPLAAHAQSAGSNVVTLGWFHVMPQQSSTPLTTNVAPTPINTPLRLPPSFTSAGTGLSTSGADTVG
LTVSHFLTDHIAVTSVAGVPPVFKVSGHGTITPPGPAGALGTQNIGLAQVNPIVKSVRQWSPAVVFQYYFAQATAKFRPF
VGIGVSYNWFSDLQLNTNFIKQTQDNLGAILAAGAGKPGVTQVSAKASSSWQPVFNAGLSYNITDHWGLVASVTYIPLKT
TSTVTIKAADGTTLAESKSDLKADPIISYVAVSYKF
>Mature_276_residues
MRKALCTALGVAALTPLAAHAQSAGSNVVTLGWFHVMPQQSSTPLTTNVAPTPINTPLRLPPSFTSAGTGLSTSGADTVG
LTVSHFLTDHIAVTSVAGVPPVFKVSGHGTITPPGPAGALGTQNIGLAQVNPIVKSVRQWSPAVVFQYYFAQATAKFRPF
VGIGVSYNWFSDLQLNTNFIKQTQDNLGAILAAGAGKPGVTQVSAKASSSWQPVFNAGLSYNITDHWGLVASVTYIPLKT
TSTVTIKAADGTTLAESKSDLKADPIISYVAVSYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=276, Percent_Identity=23.1884057971014, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 28714; Mature: 28714

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKALCTALGVAALTPLAAHAQSAGSNVVTLGWFHVMPQQSSTPLTTNVAPTPINTPLRL
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCC
PPSFTSAGTGLSTSGADTVGLTVSHFLTDHIAVTSVAGVPPVFKVSGHGTITPPGPAGAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCC
GTQNIGLAQVNPIVKSVRQWSPAVVFQYYFAQATAKFRPFVGIGVSYNWFSDLQLNTNFI
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCEECCCCCEEECHHHH
KQTQDNLGAILAAGAGKPGVTQVSAKASSSWQPVFNAGLSYNITDHWGLVASVTYIPLKT
HHHHHCCCEEEEECCCCCCCEEEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEEEEC
TSTVTIKAADGTTLAESKSDLKADPIISYVAVSYKF
CCEEEEEECCCCEECCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRKALCTALGVAALTPLAAHAQSAGSNVVTLGWFHVMPQQSSTPLTTNVAPTPINTPLRL
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCC
PPSFTSAGTGLSTSGADTVGLTVSHFLTDHIAVTSVAGVPPVFKVSGHGTITPPGPAGAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCC
GTQNIGLAQVNPIVKSVRQWSPAVVFQYYFAQATAKFRPFVGIGVSYNWFSDLQLNTNFI
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCEECCCCCEEECHHHH
KQTQDNLGAILAAGAGKPGVTQVSAKASSSWQPVFNAGLSYNITDHWGLVASVTYIPLKT
HHHHHCCCEEEEECCCCCCCEEEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEEEEC
TSTVTIKAADGTTLAESKSDLKADPIISYVAVSYKF
CCEEEEEECCCCEECCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]