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The map label for this gene is rpoE [C]

Identifier: 126452202

GI number: 126452202

Start: 2018559

End: 2019095

Strand: Reverse

Name: rpoE [C]

Synonym: BURPS1106A_2035

Alternate gene names: 126452202

Gene position: 2019095-2018559 (Counterclockwise)

Preceding gene: 126454953

Following gene: 126453352

Centisome position: 50.62

GC content: 63.13

Gene sequence:

>537_bases
GTGGAATCCCGCTTGAGAGCGCTGTTCGTCAGCGGCCTCGCCGGCCATGCGCCGGATTACCGGTCGTTCCTTTCGGAGCT
GACCCGCCACTTGCGCGGCTTTCTCCGCAAGCGGATCCCGCAGTTTGACGCGGACATCGAAGATCTCGTGCAGGAGATCC
TGCTCGCCGTCCATAATGCACGTCATACGTATCGCGCGGACGAACCGCTGACGGCGTGGGTACATGCCATCGCGCGCTAC
AAGCTGATGGATTTCTTCCGGACGCGCGCCCGCCGCGAAGCGCTGCACGATCCGCTTGACGATCACACGGACATCTTTTC
CGAACCCGACGACGACGCGTCCGACGCGCATCGCGACATCGGCAGGCTGCTGGATCATCTGCCGGACAAGCAACGGCTAT
CGATCCTGCATGTGAAGCTGCAGGGCTTGTCGGTTGCCGAGGCGGCGCAACTGATCGGTGCGTCCGAATCCGTCGTCAAG
GTCAGCATTCACAGGGGACTGAAGGCGCTCGCGGCGCGCGTGCGAGGAGTGGTATGA

Upstream 100 bases:

>100_bases
GGCGCTGGCAGCGCGATGCGTGAGCCCCGGCGTTCGGGGCGGGACGCAGCCGCGGCAAGATGGCCTGGTGCGCTAGGTCC
GGGGCCCGATCTTGCATTCC

Downstream 100 bases:

>100_bases
AAACGAACGATTTCATCGACATGCTGGCGGCGGGCGTCACACCCGTCGAGCGCGGCGTCCCGGCCAGGCGCCTGGGCAGT
GCGCTTGCCGTCGCTGCGGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigM; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; ECF Family Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigZ; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase ECF-Type Sigma Factor X; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigM; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIARY
KLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVK
VSIHRGLKALAARVRGVV

Sequences:

>Translated_178_residues
MESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIARY
KLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVK
VSIHRGLKALAARVRGVV
>Mature_178_residues
MESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIARY
KLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVK
VSIHRGLKALAARVRGVV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20180; Mature: 20180

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNA
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RHTYRADEPLTAWVHAIARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
GRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVKVSIHRGLKALAARVRGVV
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNA
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RHTYRADEPLTAWVHAIARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
GRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVKVSIHRGLKALAARVRGVV
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA