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The map label for this gene is intD [H]

Identifier: 126451995

GI number: 126451995

Start: 1499212

End: 1499598

Strand: Reverse

Name: intD [H]

Synonym: BURPS1106A_1546

Alternate gene names: 126451995

Gene position: 1499598-1499212 (Counterclockwise)

Preceding gene: 126455426

Following gene: 126453438

Centisome position: 37.6

GC content: 62.53

Gene sequence:

>387_bases
ATGATTAGCGCGCTGGAGCAGCGCAGGCGAACCACTACTGACCTCGTATTCACGCGGGAGTACACGCGCGGAGACGGGCC
ACCCAAGCTGATTCGGCAGATCGACAAGCGGGACTTCGCGCGTGCGTGCCGGGCGACCGGAATGGTCGACTTCCACTGGC
ACGATCTGCGCCACACCTGGGCGAGCTGGCACGTGCAGCATGGCACGCCGCTGATGGTGCTGAAAGAGTTGGGCGGCTGG
GAGACCATTGCGATGGTGCAGAAGTACGCGCCCCTCGCGCCAAGCCGTCTGGCGCAGCACGCAGGCACGGTCACATTTTG
GGCGCAGTCGCTGGAGCAGAAAGAAAAAACGCCACTATCGGAAGCGGCACAAATCCTTGCTGCATAA

Upstream 100 bases:

>100_bases
AATCGGCACGCTCTCGATATGAAAGCCGGCGAATACGCGCCGGATCGCACACGCTGAAGCGAAGTCGAAGCGGGCTCGAG
CTGTACCGCTCACTCAGGAC

Downstream 100 bases:

>100_bases
GGATTTCAACTGGCCCGCCCTACACGATTCGAACGTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCGACTGAGCTA
AGGGCGGTCGCAAAGAAAGG

Product: prophage DLP12 integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MISALEQRRRTTTDLVFTREYTRGDGPPKLIRQIDKRDFARACRATGMVDFHWHDLRHTWASWHVQHGTPLMVLKELGGW
ETIAMVQKYAPLAPSRLAQHAGTVTFWAQSLEQKEKTPLSEAAQILAA

Sequences:

>Translated_128_residues
MISALEQRRRTTTDLVFTREYTRGDGPPKLIRQIDKRDFARACRATGMVDFHWHDLRHTWASWHVQHGTPLMVLKELGGW
ETIAMVQKYAPLAPSRLAQHAGTVTFWAQSLEQKEKTPLSEAAQILAA
>Mature_128_residues
MISALEQRRRTTTDLVFTREYTRGDGPPKLIRQIDKRDFARACRATGMVDFHWHDLRHTWASWHVQHGTPLMVLKELGGW
ETIAMVQKYAPLAPSRLAQHAGTVTFWAQSLEQKEKTPLSEAAQILAA

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=94, Percent_Identity=50, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 14637; Mature: 14637

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISALEQRRRTTTDLVFTREYTRGDGPPKLIRQIDKRDFARACRATGMVDFHWHDLRHTW
CCCHHHHHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ASWHVQHGTPLMVLKELGGWETIAMVQKYAPLAPSRLAQHAGTVTFWAQSLEQKEKTPLS
HHHEECCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHH
EAAQILAA
HHHHHHCC
>Mature Secondary Structure
MISALEQRRRTTTDLVFTREYTRGDGPPKLIRQIDKRDFARACRATGMVDFHWHDLRHTW
CCCHHHHHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ASWHVQHGTPLMVLKELGGWETIAMVQKYAPLAPSRLAQHAGTVTFWAQSLEQKEKTPLS
HHHEECCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHH
EAAQILAA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]