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The map label for this gene is fliD [H]

Identifier: 126451618

GI number: 126451618

Start: 3857425

End: 3858945

Strand: Direct

Name: fliD [H]

Synonym: BURPS1106A_3953

Alternate gene names: 126451618

Gene position: 3857425-3858945 (Clockwise)

Preceding gene: 126452490

Following gene: 126452338

Centisome position: 96.71

GC content: 67.26

Gene sequence:

>1521_bases
ATGTCCACGCCCGTCACCAGCACGACGCAGCAGCAAACCAACTCGGCGCTGCAGCAAGCAGCGCAGTCGATCATCAGCGG
CTCGACGGGCAATTCGTCGATGGACGTCAACTCGCTCGTCACCGCGCTCGTCAACGCGAAGACGGCCGGCCAGAGCGCGG
CGCTGTCGACTTCGATCGCGACCGACCAGACGACGCTTTCCGCGCTCGGCACGCTGAAGGCCGCGCTCACCGCGCTGCAA
GCGGGGATCGGCTCGCTCAGCGACGGCACGCTGACCCAGAAATTCACCGCCACGGCAACGGGCACCGGGCTCACCGCGAC
GACGGGCGCGGGTGCGGTGGCCGGCAGCTACTCGGTCGCCGTCACGCAGATCGCCACGTCGCAGACGCTGTCTTCCGGCG
CATTCAATGCGACGCAGCAGCTCGGCACCGGCACGCTGACGCTGAGCGTCGGCGGCAAATCGACGTCGATCTCGATCGAT
TCGACGAACAACACGCTTTCCGGCATCGCCGCCGCGATCAACTCCGCGTCGAACAACCCCGGCGTGACGGCGACGATCGT
CACGGGCACCGACGGCGCGCACCTCGTGCTGCGCTCGGCAAGCACGGGCGCGGCCAACGTGATCAACGTCGGCGTGAGCA
ACCTGTCCGGCGACAACGGGCTGTCGAGCCTCGCCGTCACGTCGACGGCGAGCACGACGGGCGGCCAGTCGACGATCCGC
TCGGGCGGCAGCGTCGCATGGTCGCAAAGCACCTCCGCTCAGGACGCCGAATTCACGGTGGGCGGCATCGCCGCGTCGAG
CGCGAGCAATGCGGTGTCGGGCGCGATCGCCGGCGTCACGCTGAACCTCACGCAAGCCGCCGTCGGCGCCACGCAGACGC
TGAACGTGACCACCGACACCACCGCGCAGGCCACCGCGATCACGAACGTCGTCAACCTGTACAACACGGTGATCACGACG
ATGTCGTCGCTGTCGTCGCTATCCGGCGCGGGCACCAGCTCGCAAAGCGCGGGGCCGCTCCTCGGCGACTCCACGCTCAA
CATGATCCGCAACTCGCTCGCGCGCGTGGTGGGCGCGGGCGTGACGACGGGCGGCTCGACCACGTCGCTCGCGTCGATCG
GCATCAAGTTCGCCGACGGCTCGTCGTCGTCGCAGACGGACGGCGCACTGACCATCGATACGGCCAAGCTCAACGCCGCG
CTGCAAAACAGCCCGTCGACCGTCGCCGCACTCTTCAATTCGACGAACGGCATCGGCGCGCAGCTGAACACCACGATCCA
GAACTATGTGCAGACGGGCGGCGTCTTCGATACGCGCTCGAACGCGCTGAACCAGGACCTGAAGAGCCTCGCGCAGCAGC
AGACGCGGCTCGCGTCGTACGCGTCGCAACTCACGTCGCAATACAACGCGCAGTTCACCGCGCTCAACACGCTGATGGCG
CAGATGAACAGCAACTCGAACTACCTGACGCAGCTGTTCGGCGGCAGCAACAGCTCGGGCGCGATGGCGAACAACAAGTA
A

Upstream 100 bases:

>100_bases
CGGAGCAACACCCTCGTGGCCGCCGCACGTTTTTGCTTTCTGATTCTTCCGAATTCCGCGAAATTCGCCGGCCGTCTGCG
GCGGCGAAGGGAGCCACCCG

Downstream 100 bases:

>100_bases
CGAATCGGACGCGATGGAGAAGCCTGAAATGGATCAGATGTCGTTGATCGAACACGTGCTGTCGATCACCCGCGAAATCG
ATCACGCGGTGCAGATGGCC

Product: flagellar hook-associated protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSTPVTSTTQQQTNSALQQAAQSIISGSTGNSSMDVNSLVTALVNAKTAGQSAALSTSIATDQTTLSALGTLKAALTALQ
AGIGSLSDGTLTQKFTATATGTGLTATTGAGAVAGSYSVAVTQIATSQTLSSGAFNATQQLGTGTLTLSVGGKSTSISID
STNNTLSGIAAAINSASNNPGVTATIVTGTDGAHLVLRSASTGAANVINVGVSNLSGDNGLSSLAVTSTASTTGGQSTIR
SGGSVAWSQSTSAQDAEFTVGGIAASSASNAVSGAIAGVTLNLTQAAVGATQTLNVTTDTTAQATAITNVVNLYNTVITT
MSSLSSLSGAGTSSQSAGPLLGDSTLNMIRNSLARVVGAGVTTGGSTTSLASIGIKFADGSSSSQTDGALTIDTAKLNAA
LQNSPSTVAALFNSTNGIGAQLNTTIQNYVQTGGVFDTRSNALNQDLKSLAQQQTRLASYASQLTSQYNAQFTALNTLMA
QMNSNSNYLTQLFGGSNSSGAMANNK

Sequences:

>Translated_506_residues
MSTPVTSTTQQQTNSALQQAAQSIISGSTGNSSMDVNSLVTALVNAKTAGQSAALSTSIATDQTTLSALGTLKAALTALQ
AGIGSLSDGTLTQKFTATATGTGLTATTGAGAVAGSYSVAVTQIATSQTLSSGAFNATQQLGTGTLTLSVGGKSTSISID
STNNTLSGIAAAINSASNNPGVTATIVTGTDGAHLVLRSASTGAANVINVGVSNLSGDNGLSSLAVTSTASTTGGQSTIR
SGGSVAWSQSTSAQDAEFTVGGIAASSASNAVSGAIAGVTLNLTQAAVGATQTLNVTTDTTAQATAITNVVNLYNTVITT
MSSLSSLSGAGTSSQSAGPLLGDSTLNMIRNSLARVVGAGVTTGGSTTSLASIGIKFADGSSSSQTDGALTIDTAKLNAA
LQNSPSTVAALFNSTNGIGAQLNTTIQNYVQTGGVFDTRSNALNQDLKSLAQQQTRLASYASQLTSQYNAQFTALNTLMA
QMNSNSNYLTQLFGGSNSSGAMANNK
>Mature_505_residues
STPVTSTTQQQTNSALQQAAQSIISGSTGNSSMDVNSLVTALVNAKTAGQSAALSTSIATDQTTLSALGTLKAALTALQA
GIGSLSDGTLTQKFTATATGTGLTATTGAGAVAGSYSVAVTQIATSQTLSSGAFNATQQLGTGTLTLSVGGKSTSISIDS
TNNTLSGIAAAINSASNNPGVTATIVTGTDGAHLVLRSASTGAANVINVGVSNLSGDNGLSSLAVTSTASTTGGQSTIRS
GGSVAWSQSTSAQDAEFTVGGIAASSASNAVSGAIAGVTLNLTQAAVGATQTLNVTTDTTAQATAITNVVNLYNTVITTM
SSLSSLSGAGTSSQSAGPLLGDSTLNMIRNSLARVVGAGVTTGGSTTSLASIGIKFADGSSSSQTDGALTIDTAKLNAAL
QNSPSTVAALFNSTNGIGAQLNTTIQNYVQTGGVFDTRSNALNQDLKSLAQQQTRLASYASQLTSQYNAQFTALNTLMAQ
MNSNSNYLTQLFGGSNSSGAMANNK

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=481, Percent_Identity=34.3035343035343, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 49699; Mature: 49568

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPVTSTTQQQTNSALQQAAQSIISGSTGNSSMDVNSLVTALVNAKTAGQSAALSTSIA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHEHHCC
TDQTTLSALGTLKAALTALQAGIGSLSDGTLTQKFTATATGTGLTATTGAGAVAGSYSVA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCEEE
VTQIATSQTLSSGAFNATQQLGTGTLTLSVGGKSTSISIDSTNNTLSGIAAAINSASNNP
EEEHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCC
GVTATIVTGTDGAHLVLRSASTGAANVINVGVSNLSGDNGLSSLAVTSTASTTGGQSTIR
CEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHC
SGGSVAWSQSTSAQDAEFTVGGIAASSASNAVSGAIAGVTLNLTQAAVGATQTLNVTTDT
CCCCEEECCCCCCCCCCEEEEEEECCCCCCHHHHEEEEEEEEEHHHHCCCCEEEEEECCC
TAQATAITNVVNLYNTVITTMSSLSSLSGAGTSSQSAGPLLGDSTLNMIRNSLARVVGAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
VTTGGSTTSLASIGIKFADGSSSSQTDGALTIDTAKLNAALQNSPSTVAALFNSTNGIGA
CCCCCCCHHHHEEEEEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCCCCCC
QLNTTIQNYVQTGGVFDTRSNALNQDLKSLAQQQTRLASYASQLTSQYNAQFTALNTLMA
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QMNSNSNYLTQLFGGSNSSGAMANNK
HHCCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
STPVTSTTQQQTNSALQQAAQSIISGSTGNSSMDVNSLVTALVNAKTAGQSAALSTSIA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHEHHCC
TDQTTLSALGTLKAALTALQAGIGSLSDGTLTQKFTATATGTGLTATTGAGAVAGSYSVA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCEEE
VTQIATSQTLSSGAFNATQQLGTGTLTLSVGGKSTSISIDSTNNTLSGIAAAINSASNNP
EEEHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCC
GVTATIVTGTDGAHLVLRSASTGAANVINVGVSNLSGDNGLSSLAVTSTASTTGGQSTIR
CEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHC
SGGSVAWSQSTSAQDAEFTVGGIAASSASNAVSGAIAGVTLNLTQAAVGATQTLNVTTDT
CCCCEEECCCCCCCCCCEEEEEEECCCCCCHHHHEEEEEEEEEHHHHCCCCEEEEEECCC
TAQATAITNVVNLYNTVITTMSSLSSLSGAGTSSQSAGPLLGDSTLNMIRNSLARVVGAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
VTTGGSTTSLASIGIKFADGSSSSQTDGALTIDTAKLNAALQNSPSTVAALFNSTNGIGA
CCCCCCCHHHHEEEEEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCCCCCC
QLNTTIQNYVQTGGVFDTRSNALNQDLKSLAQQQTRLASYASQLTSQYNAQFTALNTLMA
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QMNSNSNYLTQLFGGSNSSGAMANNK
HHCCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1527488; 9097040; 9278503; 2659972; 6305924 [H]