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The map label for this gene is recD [H]

Identifier: 126451603

GI number: 126451603

Start: 1368421

End: 1371093

Strand: Direct

Name: recD [H]

Synonym: BURPS1106A_1391

Alternate gene names: 126451603

Gene position: 1368421-1371093 (Clockwise)

Preceding gene: 126455228

Following gene: 126454932

Centisome position: 34.31

GC content: 75.61

Gene sequence:

>2673_bases
ATGAGCGTGGTCGACGAACGTTTCGCGTGGACGGGCGGCCTGGCGGACCGTCTGCCCGAGCCGGCCGATTTCGGGCTCGC
GCTCGCCGAAGGCTTCGCGCGCCGGATCGGGATGCTGTCGCGGCGTGTCGGCGCGAGCGCCGCGGCCGCGCGCTGGGCGG
CACGCGCGGCGTTCGCCGCGAGCCGCGCGACGGCGGCGGGGCACGTATGCGTCGCGCTGCGCGCGCTCGCGCAGCGCTAC
GACGAGCCGTACGACGACGTACGCGCGGCGCTCGCCGCGAGCGGCGTGACCGCGTTCGACGGCATCGTGCGCGGCGGCGA
GTGCCCACTCGTCGTCGATCGCGATGGTCGGCTGTATCTCGCGCGCTACTTCGAATACGAGACGCGGCTCGCGAACGCGC
TCGTCGAGCGGAGCCGATGCGGCGGCGCGCCGGCGGGCGGCGCCGATGCGCTCTCGCCCGACGCGCTCGGCGAGCGGCTC
GTCCGCTATTTCGGGCCGCAGAAGGAGCGGGGCGTCGATTGGCAGCGCGTTGCGGCGCTCATCGCGCTCACGGGCCGCGT
GACGATCGTGAGCGGCGGGCCGGGCACCGGCAAGACGACGACGGTCGTCGGCGTGATCGCGTGCCTGCTCGATGCGCATC
CGGAGTTGCGGATCGCGCTTGCCGCGCCCACCGGCAAGGCCGCGCAGCGGATGCAGGAGGCGCTGCACGCGCGCGCCGGC
AGCCTGCCGGCGGAACTCGCGGCGCGCCTGCCGCGCACGTCCTGCACGCTGCACCGGCTGCTGGGCGGTGGCCCGGGCGG
GCGCTTCGCGCACCACCGCGACAATCCGCTGCCGTACGATCTCGTCGTCGTCGACGAGGCTTCGATGATCGACGTCGCGC
TCGCCGCGCATTTGCTCGCCGCGCTCGCGCCGAACGCGCGCCTCGTGCTGCTCGGCGACAAGGATCAGCTCGCGGCCGTC
GAGGCGGGCGCGGTGTTCGCCGAGCTGAGCGCGCGTCCCGCGTTCAGCCCGGCGACGTGCGCGACGATCGCGCGCGCGCT
CGGCGTCGGCGAGGCCGAGTTCGTGGCGGCGCTGCCGGACGGGTTCGTCGTGCAGGCGGCCGGCGCGGAGCGCGTGGCGG
ACGCGCGTGCGGCGGCGGCCGATATGGACGCGGCCGCGCGCGGGACGGCCGGCGCCGCGGCTGCGGCCGCACGAGCGACC
GCGGCCGCAGCCGCACGAATGACCACGGCCGCAGCCGCGGCGAGGGGGGCCGCGCCGGCGCCGCACGCGGGCCGGCGTGG
CGGCGGGCGCGCATCGAATCGGACCGTCGACGATGCGCAGGGATCGTTGTTCGCGTTCGACGACGACGCATTCGGTGTGG
GCACGTCGGGCGGCGAGCCGGGGGCCGGCGCGCAAGGTGCCGGGAGGCGAGATGGCGGGGCGCCGAGCCTCGACGGGCCG
CACGCCGGGCATCGGGACGGCGGCGCATCGCCCGGCGTCGCGCACAGCCGGCGCGATGCGTTCGACGCGCGTGCCCGGTC
GGGTCCGGCGGATGTTTCCGACCTGGAAAACGCCGCGCGCGCGTACGCGCCGGCGGGCGCAGCCGGCCCGGCCGATTCGC
CGGCGGACGCGTCTTTCGTCGAGCCGGCCGCCTGGATCGAAGCGGACGAACTCGCGTGGCTCGACAACGCGGTCTTTTCG
TTCTCCGAAGGCGCTTCGGCGAATGCCGAAGCCGACGGGCGGCGAAGCGCCGCGGCGACGGCGACCGACGCGGACGCGCG
CACCGCGCCGCCGGTTGCGCGGGAAGCGACGGCGCCGACGCCGCGCGAGACCGCGCGATCGGACGGTTCCGCCGTCGCGC
CGCTGACCGACTGCGTCGTCTGGCTTGAACGCAACTATCGCTTCGGCCTTGATTCGCCGATCGGCCGGCTGTCGCTTGCG
ATTCGCCGCGGCGCGGTGCAGGACGCGCTCGACGCGCTATCGACGCAAGACGACGCGGCCGCGCGTTTTAGCGACGACGG
CGGTGCGACGCTGTCGGCCGCGACGGTCGAGCAGCTCGCGCGAGGCTTCGCCGGCTATGCGGCCGCGCTGCGCGACGCGC
TGGCGACGCCCGAACCCGATGCGCTGCCGCTCTTCGACGTGCTCAACCGCTTTCGCGTGCTTTGCGCGACGCGCACGGGC
GCGCGCGGCGCGGAGGAAGTCAACGCGCGCATGGCGGCCGAGGTGCGCCGCGCGGTGCGCGTGCCGCTCGCGCTCGGTGC
GCACTGGTTCGCCGGACGGCCCGTGATGGTGACGCGCAACGATTACGCGCTCGGCCTCTTCAACGGCGACATCGGCATTG
CGCTGCCCGGCGCGCGCGGTGCGCTGCGCGTCTGGTTTCGCGGCGCGGACGGCCGCGCCCGGGCGGTGTCGCCCGCCGCG
CTGCCGCCGCACGACACGGCGTTCGCGCTGACCGTCCACAAATCGCAGGGCTCGGAATTCGACGACGCGGCACTGATCCT
GCCCGCGTCGTTCAATCGCGTGCTGTCGCGCGAACTCGTCTACACCGCGATCACGCGCGCGCGCGCGCGCGTGCAGGTGA
TCGGCTCGCGCGCGGTGCTCGCGCTCGCGATCGCGACGCGCACGGCGCGCGATTCCGGCCTTGCCGCACGAATCGCCGAT
GCGCTGCGCGCGCGGCAGGAGGGCGCGCGATGA

Upstream 100 bases:

>100_bases
CCGATTGGCGAAATGGCGGCGCGAGCGCCGGCGTGCATGCGCGGCGGCCCGCACGCGCGCTGATCGAGGCGCTCGACGCG
CTGATGCGCGAGGGGGATGC

Downstream 100 bases:

>100_bases
CGCTGCGCTACGCATTCTCGCCGGACGAGGTCGAGCTGACGGCGGTTCGCGCGCAAGGCGCGGGCGGGCAGAACGTCAAC
AAGGTATCGAGCGCGATTCA

Product: exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 890; Mature: 889

Protein sequence:

>890_residues
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRY
DEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERL
VRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAG
SLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLAALAPNARLVLLGDKDQLAAV
EAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARAT
AAAAARMTTAAAAARGAAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGP
HAGHRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFS
FSEGASANAEADGRRSAAATATDADARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLA
IRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTG
ARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAA
LPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIAD
ALRARQEGAR

Sequences:

>Translated_890_residues
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRY
DEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERL
VRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAG
SLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLAALAPNARLVLLGDKDQLAAV
EAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARAT
AAAAARMTTAAAAARGAAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGP
HAGHRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFS
FSEGASANAEADGRRSAAATATDADARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLA
IRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTG
ARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAA
LPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIAD
ALRARQEGAR
>Mature_889_residues
SVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRYD
EPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLV
RYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAGS
LPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLAALAPNARLVLLGDKDQLAAVE
AGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARATA
AAAARMTTAAAAARGAAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGPH
AGHRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFSF
SEGASANAEADGRRSAAATATDADARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAI
RRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTGA
RGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAAL
PPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADA
LRARQEGAR

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=270, Percent_Identity=44.8148148148148, Blast_Score=209, Evalue=6e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 91358; Mature: 91227

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00583 PFKB_KINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAA
CCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCEEE
ARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
IALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAG
HHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
SLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLA
CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPD
HHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHEEECCC
GFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARATAAAAARMTTAAAAARGAAPA
CEEEEECCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGP
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HAGHRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDADARTAPPVAREATAPT
CCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAA
CHHHHCCCCCEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
ARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTG
HEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
ARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARG
CCCHHHHHHHHHHHHHHHHHCHHHHCCHHHCCCCEEEECCCEEEEEEECCEEEEECCCCC
ALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELV
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHH
YTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
HHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAA
CCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCEEE
ARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
IALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAG
HHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
SLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLA
CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPD
HHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHEEECCC
GFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARATAAAAARMTTAAAAARGAAPA
CEEEEECCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGP
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HAGHRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDADARTAPPVAREATAPT
CCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAA
CHHHHCCCCCEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
ARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTG
HEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
ARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARG
CCCHHHHHHHHHHHHHHHHHCHHHHCCHHHCCCCEEEECCCEEEEEEECCEEEEECCCCC
ALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELV
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHH
YTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
HHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]