Click here to switch to the map view.

The map label for this gene is yebS [H]

Identifier: 126451556

GI number: 126451556

Start: 3290220

End: 3290876

Strand: Direct

Name: yebS [H]

Synonym: BURPS1106A_3372

Alternate gene names: 126451556

Gene position: 3290220-3290876 (Clockwise)

Preceding gene: 126454721

Following gene: 126452396

Centisome position: 82.49

GC content: 67.73

Gene sequence:

>657_bases
ATGGATAGAAACGCCCTGATTGCCTGTCACGAATGCGACGCACTGTTGCACAAACCGCGCCTTAGCGGCAAGGACACCGC
CCGCTGCCCGCGCTGCGACGCGCTGCTCTACCGGAGCGGCTCGGCGCAGATCGACCGCATCTGCGCGCTCACGACGGGCG
CGCTGATCACGTTCCTGATCGCGCAGGGCTTCCCGATCCTCGAAATGGACGTGAACGGCATGCGCGTGCAGACGACGCTC
TTCGGCGCGCTCGAGGCGATGTGGAATCAGGGGATGCCGCTCGTCGCGGTGATGGTGTTCTGCTCGACGCTGCTGTTTCC
GCTCGTCGAGATGTCCGCGCTGCTCTACGTGCTCTTTCCGCTGCGCTCGGGCGCGATCGCGCCCGGCTTCAACGGCGTGC
TGCGCGCGATCCAGCTCGTGCGCCCGTGGGGGATGATCGAGGTGTTCATGCTCGGTATCCTCGTGACGATCGTCAAGATG
GTGAGCCTCGCGCGCGTGGTCCCCGAGGCCGCGCTCTTCGCGTTCGCGGCGCTCACGCTGATGCTCGCCGTCGTCGTGAT
GTTCGATCCGCGCACGCTGTGGGACATCGCCGATTCGCTGCGCGAGCGCGCGGCCGGCGCGGCGCCCGGCTCGGCCGACG
AGTCGAGCGCGCGATGA

Upstream 100 bases:

>100_bases
CGCCGACGCTTGACACCTCGAAAATCGCCATTTGATAAGATTGGCGCGGGTTTCGGCCCTGTGAACGCGTCGCCGCGACG
CCGCGCAACCGCCTTTCCAT

Downstream 100 bases:

>100_bases
CCGGCATCGTCACCGCCGCGCGCGCCGGCATGGCGAGCTGCCATGCGTGCGGCCACGTGCAGAAGCTCGCGCGGCCGGCT
CAGCAGGCGCTCGGCTCGCA

Product: paraquat-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDRNALIACHECDALLHKPRLSGKDTARCPRCDALLYRSGSAQIDRICALTTGALITFLIAQGFPILEMDVNGMRVQTTL
FGALEAMWNQGMPLVAVMVFCSTLLFPLVEMSALLYVLFPLRSGAIAPGFNGVLRAIQLVRPWGMIEVFMLGILVTIVKM
VSLARVVPEAALFAFAALTLMLAVVVMFDPRTLWDIADSLRERAAGAAPGSADESSAR

Sequences:

>Translated_218_residues
MDRNALIACHECDALLHKPRLSGKDTARCPRCDALLYRSGSAQIDRICALTTGALITFLIAQGFPILEMDVNGMRVQTTL
FGALEAMWNQGMPLVAVMVFCSTLLFPLVEMSALLYVLFPLRSGAIAPGFNGVLRAIQLVRPWGMIEVFMLGILVTIVKM
VSLARVVPEAALFAFAALTLMLAVVVMFDPRTLWDIADSLRERAAGAAPGSADESSAR
>Mature_218_residues
MDRNALIACHECDALLHKPRLSGKDTARCPRCDALLYRSGSAQIDRICALTTGALITFLIAQGFPILEMDVNGMRVQTTL
FGALEAMWNQGMPLVAVMVFCSTLLFPLVEMSALLYVLFPLRSGAIAPGFNGVLRAIQLVRPWGMIEVFMLGILVTIVKM
VSLARVVPEAALFAFAALTLMLAVVVMFDPRTLWDIADSLRERAAGAAPGSADESSAR

Specific function: Unknown

COG id: COG2995

COG function: function code S; Uncharacterized paraquat-inducible protein A

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pqiA family [H]

Homologues:

Organism=Escherichia coli, GI1788137, Length=188, Percent_Identity=26.063829787234, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787183, Length=196, Percent_Identity=25.5102040816327, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005219
- InterPro:   IPR011031
- InterPro:   IPR007498 [H]

Pfam domain/function: PF04403 PqiA [H]

EC number: NA

Molecular weight: Translated: 23616; Mature: 23616

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRNALIACHECDALLHKPRLSGKDTARCPRCDALLYRSGSAQIDRICALTTGALITFLI
CCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AQGFPILEMDVNGMRVQTTLFGALEAMWNQGMPLVAVMVFCSTLLFPLVEMSALLYVLFP
HCCCCEEEECCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRSGAIAPGFNGVLRAIQLVRPWGMIEVFMLGILVTIVKMVSLARVVPEAALFAFAALTL
HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLAVVVMFDPRTLWDIADSLRERAAGAAPGSADESSAR
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRNALIACHECDALLHKPRLSGKDTARCPRCDALLYRSGSAQIDRICALTTGALITFLI
CCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AQGFPILEMDVNGMRVQTTLFGALEAMWNQGMPLVAVMVFCSTLLFPLVEMSALLYVLFP
HCCCCEEEECCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRSGAIAPGFNGVLRAIQLVRPWGMIEVFMLGILVTIVKMVSLARVVPEAALFAFAALTL
HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLAVVVMFDPRTLWDIADSLRERAAGAAPGSADESSAR
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]