Click here to switch to the map view.

The map label for this gene is hipB [C]

Identifier: 126447378

GI number: 126447378

Start: 629068

End: 629472

Strand: Reverse

Name: hipB [C]

Synonym: BMA10247_A0681

Alternate gene names: 126447378

Gene position: 629472-629068 (Counterclockwise)

Preceding gene: 126445767

Following gene: 126446852

Centisome position: 26.76

GC content: 72.1

Gene sequence:

>405_bases
ATGGCCATCCTCATCGAGCACGAGATCAAGACACTCGGCCAGCTGCGGCCGATTCTGCGCGGCTTCCGCAAATCGGCCGG
ATTGACGCAGGCGATGCTCGCGAGCCGCCTCGGCGTCACGCAGCAGACCTACGCGCAGTTCGAGGCGAACCCGGCGTCGG
CGAGCGTCGAGCGGCTGTTCAAGGTGCTGCGCGCGCTCGACATCGAACTCACGCTCACGCTCACGCAGGTCTACGCCGCG
CCCGCGGGCAAGGACAAGGGCGAGGTTGCGAAGACGGTCGCAAACGCACGCGCGGGCGCGCGACGTGCCGTGCCGCCCGC
GTCCGCGCCCGCTCCGAGCGCCGCCGGGCGCCCGCCCCGCCCCGCCCGCAAGCGCGCCGCCCCGAAAAAGCGGGAGGACT
GGTGA

Upstream 100 bases:

>100_bases
TCATCCGAAATACAGATTCAACCTTGTAAATTCTATTTACAGTGTATAAACTGTTTTTCTCGCATACAGGCGAAAATTTG
TATTCCAACCAGGTGCGCAC

Downstream 100 bases:

>100_bases
GCGCCCGCCGCGCACGCGCGACGCGCCTGCACCTGTGGATGAACGGCCTGCCCGTCGGCTACTGGGAGCACGCGCGCGAC
GGCGAGCGCCTCGTCTACTT

Product: putative transcriptionl regulator HipB

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; HipB Domain-Containing Protein; Transcriptional Regulator HipB; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator Protein; Transcriptionl Regulator HipB; HTH-Type Transcriptional Regulator HipB

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAILIEHEIKTLGQLRPILRGFRKSAGLTQAMLASRLGVTQQTYAQFEANPASASVERLFKVLRALDIELTLTLTQVYAA
PAGKDKGEVAKTVANARAGARRAVPPASAPAPSAAGRPPRPARKRAAPKKREDW

Sequences:

>Translated_134_residues
MAILIEHEIKTLGQLRPILRGFRKSAGLTQAMLASRLGVTQQTYAQFEANPASASVERLFKVLRALDIELTLTLTQVYAA
PAGKDKGEVAKTVANARAGARRAVPPASAPAPSAAGRPPRPARKRAAPKKREDW
>Mature_133_residues
AILIEHEIKTLGQLRPILRGFRKSAGLTQAMLASRLGVTQQTYAQFEANPASASVERLFKVLRALDIELTLTLTQVYAAP
AGKDKGEVAKTVANARAGARRAVPPASAPAPSAAGRPPRPARKRAAPKKREDW

Specific function: Binds To Operator Sites With The Consensus Sequence 5-'Tatccn(8)GGATA-3' And Repress The Hip Operon Promoter. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14393; Mature: 14262

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILIEHEIKTLGQLRPILRGFRKSAGLTQAMLASRLGVTQQTYAQFEANPASASVERLF
CEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH
KVLRALDIELTLTLTQVYAAPAGKDKGEVAKTVANARAGARRAVPPASAPAPSAAGRPPR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PARKRAAPKKREDW
CHHHHCCCCCCCCC
>Mature Secondary Structure 
AILIEHEIKTLGQLRPILRGFRKSAGLTQAMLASRLGVTQQTYAQFEANPASASVERLF
EEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH
KVLRALDIELTLTLTQVYAAPAGKDKGEVAKTVANARAGARRAVPPASAPAPSAAGRPPR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PARKRAAPKKREDW
CHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA