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The map label for this gene is soxC [H]

Identifier: 126447263

GI number: 126447263

Start: 1474353

End: 1475567

Strand: Reverse

Name: soxC [H]

Synonym: BMA10247_A1521

Alternate gene names: 126447263

Gene position: 1475567-1474353 (Counterclockwise)

Preceding gene: 126445892

Following gene: 126446721

Centisome position: 62.72

GC content: 73.0

Gene sequence:

>1215_bases
ATGAACGCGTTCATGCAACCGGCCGTCGCGCGCGCCGCGCGACGGATCGCGAACGATGCGCAGGCGCTCGGCGCGGCCCG
CGCGTTCGCGGTGGCGATCGCACCCGACGCCGCCGCGCGCGATCGCGAGTGCCGCCTGCCGCGCGCGGAGCTCGACGCGT
ATTCGGCAACGGGCCTCTGGGGCATCGCGGTGCCGCGCGAATTCGGCGGCGCGGCGGTATCGGCGGCGACGCTCGCCGAG
GTCACGGCGATCGTATCGGAAGCCGATCCCGCGATCGGGCAGATTCCGCAGAACCATTTCTTCATGCTCGAAGTGCTGCG
CGTGAACGGCACGCGTGCGCAGCAGCGCTTCTACTTCGAGCGCGCGCTCGCCGGCGAGCGCTTCGGCAACGCGCTGTCCG
AGCGCGGCACGAAGCACGCGCGCGACTACCGGGCGACGATCACGCCCGACGGCGCGGGCTTCCGGCTGAACGGCCGCAAG
TTCTATTCGACGGGGGCGCTCTTCGCGCACTGGATTGCGGTCGTCGCGAAGGCGCCGGACGACCGGCTGCACGTCGCGTT
CACGCCGGCGCACGCGCCGGGCCTCACGGTCGAAGACGACTGGAACGGCTTCGGCCAGCGCACCACGGGCAGCGGCACGA
CGCGGCTCGACGACGTGTATGTCGACGCATCGGCCGTCGTGCCGTACAGCGACGCGTTCGACGCGAAGCCGACGCCCGTC
GGCCCGCTCGGGCAGTTGCTGCACGCGGGCGTCGATCTCGGCATCGCGCGCGCCGCGTTCGCCGACGCGTGCCGCTTCGT
GCGCGAGCGCGCGCGGCCGTGGGTCGACAGCGGCGTTGCGCGCGCGAGCGACGATCCGCTCGCGCTCGAGATCTTCGGCA
AGCTCGCGGTCGAGCTCGATGCGGCCGGCGCGCTGACCGAGCGAGCGGGCTTGCGCGTCGACGCGGCGATCGACGACGCG
AACGAGCGCACGGTGGCGGCCGCGTCGATCGCGGTCGCGAAGGCGCGCGCGGCGACGACCGAGATCGCGCTCGCCGCGTC
GTCGCGCCTGCTCGAACTCGCGGGCACGCAGGGCGCGCTCGCCGAGCACGCGCTCGATCGCCATTGGCGCAACGCGCGCA
CGCACACGCTGCACGATCCGGTGCGCTGGAAATACATCGCGATCGGCGACTACGCCGTGAACGACACGCTGCCGCCGCGC
CACGGCGCGCTATAA

Upstream 100 bases:

>100_bases
ACGCACACGCTGCACGACCCGGTGCGCTGGAAGTATCACCTCGTCGGCAACTACTATCTGAACGGCGTCGCGCCCGCGCG
CCACGCATGGAACTGAGCCG

Downstream 100 bases:

>100_bases
CGCCGCGCCGCATCGCCGCGCCGCCGCGCGCGTCCGCACGCATCGACCGTATCGACCGTATCGACCGTATCGAGAGAACG
CTTCACCATGACCCGACAGA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNAFMQPAVARAARRIANDAQALGAARAFAVAIAPDAAARDRECRLPRAELDAYSATGLWGIAVPREFGGAAVSAATLAE
VTAIVSEADPAIGQIPQNHFFMLEVLRVNGTRAQQRFYFERALAGERFGNALSERGTKHARDYRATITPDGAGFRLNGRK
FYSTGALFAHWIAVVAKAPDDRLHVAFTPAHAPGLTVEDDWNGFGQRTTGSGTTRLDDVYVDASAVVPYSDAFDAKPTPV
GPLGQLLHAGVDLGIARAAFADACRFVRERARPWVDSGVARASDDPLALEIFGKLAVELDAAGALTERAGLRVDAAIDDA
NERTVAAASIAVAKARAATTEIALAASSRLLELAGTQGALAEHALDRHWRNARTHTLHDPVRWKYIAIGDYAVNDTLPPR
HGAL

Sequences:

>Translated_404_residues
MNAFMQPAVARAARRIANDAQALGAARAFAVAIAPDAAARDRECRLPRAELDAYSATGLWGIAVPREFGGAAVSAATLAE
VTAIVSEADPAIGQIPQNHFFMLEVLRVNGTRAQQRFYFERALAGERFGNALSERGTKHARDYRATITPDGAGFRLNGRK
FYSTGALFAHWIAVVAKAPDDRLHVAFTPAHAPGLTVEDDWNGFGQRTTGSGTTRLDDVYVDASAVVPYSDAFDAKPTPV
GPLGQLLHAGVDLGIARAAFADACRFVRERARPWVDSGVARASDDPLALEIFGKLAVELDAAGALTERAGLRVDAAIDDA
NERTVAAASIAVAKARAATTEIALAASSRLLELAGTQGALAEHALDRHWRNARTHTLHDPVRWKYIAIGDYAVNDTLPPR
HGAL
>Mature_404_residues
MNAFMQPAVARAARRIANDAQALGAARAFAVAIAPDAAARDRECRLPRAELDAYSATGLWGIAVPREFGGAAVSAATLAE
VTAIVSEADPAIGQIPQNHFFMLEVLRVNGTRAQQRFYFERALAGERFGNALSERGTKHARDYRATITPDGAGFRLNGRK
FYSTGALFAHWIAVVAKAPDDRLHVAFTPAHAPGLTVEDDWNGFGQRTTGSGTTRLDDVYVDASAVVPYSDAFDAKPTPV
GPLGQLLHAGVDLGIARAAFADACRFVRERARPWVDSGVARASDDPLALEIFGKLAVELDAAGALTERAGLRVDAAIDDA
NERTVAAASIAVAKARAATTEIALAASSRLLELAGTQGALAEHALDRHWRNARTHTLHDPVRWKYIAIGDYAVNDTLPPR
HGAL

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557233, Length=360, Percent_Identity=25.2777777777778, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508101, Length=371, Percent_Identity=21.832884097035, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21356377, Length=365, Percent_Identity=27.1232876712329, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 43061; Mature: 43061

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAFMQPAVARAARRIANDAQALGAARAFAVAIAPDAAARDRECRLPRAELDAYSATGLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCEE
GIAVPREFGGAAVSAATLAEVTAIVSEADPAIGQIPQNHFFMLEVLRVNGTRAQQRFYFE
EEECCHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCCHHHHHHHHH
RALAGERFGNALSERGTKHARDYRATITPDGAGFRLNGRKFYSTGALFAHWIAVVAKAPD
HHHHHHHHHHHHHHCCCHHHHCCEEEECCCCCCEEECCCEEECCHHHHHHHHHHHHCCCC
DRLHVAFTPAHAPGLTVEDDWNGFGQRTTGSGTTRLDDVYVDASAVVPYSDAFDAKPTPV
CCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCCC
GPLGQLLHAGVDLGIARAAFADACRFVRERARPWVDSGVARASDDPLALEIFGKLAVELD
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEEHHHHHEEEC
AAGALTERAGLRVDAAIDDANERTVAAASIAVAKARAATTEIALAASSRLLELAGTQGAL
CCCHHHHHCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AEHALDRHWRNARTHTLHDPVRWKYIAIGDYAVNDTLPPRHGAL
HHHHHHHHHHCCCCCCCCCCCEEEEEEEECEEECCCCCCCCCCC
>Mature Secondary Structure
MNAFMQPAVARAARRIANDAQALGAARAFAVAIAPDAAARDRECRLPRAELDAYSATGLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCEE
GIAVPREFGGAAVSAATLAEVTAIVSEADPAIGQIPQNHFFMLEVLRVNGTRAQQRFYFE
EEECCHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCCHHHHHHHHH
RALAGERFGNALSERGTKHARDYRATITPDGAGFRLNGRKFYSTGALFAHWIAVVAKAPD
HHHHHHHHHHHHHHCCCHHHHCCEEEECCCCCCEEECCCEEECCHHHHHHHHHHHHCCCC
DRLHVAFTPAHAPGLTVEDDWNGFGQRTTGSGTTRLDDVYVDASAVVPYSDAFDAKPTPV
CCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCCC
GPLGQLLHAGVDLGIARAAFADACRFVRERARPWVDSGVARASDDPLALEIFGKLAVELD
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEEHHHHHEEEC
AAGALTERAGLRVDAAIDDANERTVAAASIAVAKARAATTEIALAASSRLLELAGTQGAL
CCCHHHHHCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AEHALDRHWRNARTHTLHDPVRWKYIAIGDYAVNDTLPPRHGAL
HHHHHHHHHHCCCCCCCCCCCEEEEEEEECEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]