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The map label for this gene is soxC [H]

Identifier: 126445892

GI number: 126445892

Start: 1475572

End: 1476810

Strand: Reverse

Name: soxC [H]

Synonym: BMA10247_A1523

Alternate gene names: 126445892

Gene position: 1476810-1475572 (Counterclockwise)

Preceding gene: 126447527

Following gene: 126447263

Centisome position: 62.77

GC content: 69.57

Gene sequence:

>1239_bases
ATGTCCGCGATCTATGAGACGGCCGTCCAACCCGCGCGTGGCGCAACCGCGCGAGACGCGCATCTAATCGCGAGCGACGC
CGAGGCGATCGACGCCGCGCGCGCGCTCGCCGCGCGGCTCGCCGAAGGCGCGGCCGAGCGCGATCGCGAGCGCCGGCTCC
CCTATGAAGAAATCGACTGGTTCTCGCAATCGGGCCTCTGGGCGATCACCGTGCCGAAGGCGTATGGCGGCGCGGGCGTA
TCGCACGTGACGCTCACCGAGGTCGTGAAGATCGTCGCGGCCGCGGACCCGTCGCTCGGCCAATTGCCGCAGAACCACTT
CGGTCTCGTCGACGTGATCGCGCTCACGGGCACCGACGAGCAGAAGCGCTTGTTCTTCGGCGAGATCCTGAAGGGCAAGC
GGTTCGGCAACGGCTTCTCCGAGAAGGGTACGAAGAATGTGCTCGATCTGAAGACGAAAGTGATCCGCGACGGCGACGGC
TATCGCGTCGACGGCACGAAGTTCTATTCGACGGGCGCGCTGTTCGCGCATTACGTGCCGGTGCTCGGCATCGACGACGC
GCGTCGAGGCTGGCTCGCATACGTTCCGAAGGGCACGCCGGGGCTCGCGGTGATCGACGACTGGTCGGGCTTCGGTCAGC
GGACGACCGCGAGCGGCACGGTGCGGCTCGACAACGTGCGCGTGCCGGCGTCGCACGTGTTCGCCGCGCACCGCGTGTCG
GACCAGCCGACGCTGAACGGCCCGCTGTCGCAGATCCTCCAGGCGGCGATCGACGCGGGCATCGCGCATGCGGCGCTCGA
CGACACGCTGCGTTTCGTGCGCGAGCGCTCGCGGCCGTGGATCGACAGCGGCGTCGAGCGCGCGGCCGACGATCCGTTGA
CGATCCGCGAGACGGGCCGCCTCGTGATCCAGCTGCACGCGGCCGATGCGCTGCTCGAGCGCGCGGCGCGCACGCTCGAT
GCGCTCGCCGCGCAAAGCGAGCTCTCCGAGGACGACGTCGCGCGCGCATCGGTGGCGGTGGGCGAGGCGAAGGTGTTGAC
GACCGAGATCGCGCTGCTCGCGAGCGAGAAGCTGTTCGAGCTCGCCGGCACGCAGGCGACGCTCGCCGAGCACGGGCTCG
ACCGCCACTGGCGCAACGCGCGCACGCACACGCTGCACGACCCGGTGCGCTGGAAGTATCACCTCGTCGGCAACTACTAT
CTGAACGGCGTCGCGCCCGCGCGCCACGCATGGAACTGA

Upstream 100 bases:

>100_bases
CGTATTTGCAGCGGCCCGGAATAAGGTTTCCCGAATCGATCGGTTGGTCGCGGCAGGCCCCGTTGATAGATTGACCGCCT
GTTCTTCAACGGAGACACGC

Downstream 100 bases:

>100_bases
GCCGATGAACGCGTTCATGCAACCGGCCGTCGCGCGCGCCGCGCGACGGATCGCGAACGATGCGCAGGCGCTCGGCGCGG
CCCGCGCGTTCGCGGTGGCG

Product: acyl-CoA dehydrogenase domain-containing protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSAIYETAVQPARGATARDAHLIASDAEAIDAARALAARLAEGAAERDRERRLPYEEIDWFSQSGLWAITVPKAYGGAGV
SHVTLTEVVKIVAAADPSLGQLPQNHFGLVDVIALTGTDEQKRLFFGEILKGKRFGNGFSEKGTKNVLDLKTKVIRDGDG
YRVDGTKFYSTGALFAHYVPVLGIDDARRGWLAYVPKGTPGLAVIDDWSGFGQRTTASGTVRLDNVRVPASHVFAAHRVS
DQPTLNGPLSQILQAAIDAGIAHAALDDTLRFVRERSRPWIDSGVERAADDPLTIRETGRLVIQLHAADALLERAARTLD
ALAAQSELSEDDVARASVAVGEAKVLTTEIALLASEKLFELAGTQATLAEHGLDRHWRNARTHTLHDPVRWKYHLVGNYY
LNGVAPARHAWN

Sequences:

>Translated_412_residues
MSAIYETAVQPARGATARDAHLIASDAEAIDAARALAARLAEGAAERDRERRLPYEEIDWFSQSGLWAITVPKAYGGAGV
SHVTLTEVVKIVAAADPSLGQLPQNHFGLVDVIALTGTDEQKRLFFGEILKGKRFGNGFSEKGTKNVLDLKTKVIRDGDG
YRVDGTKFYSTGALFAHYVPVLGIDDARRGWLAYVPKGTPGLAVIDDWSGFGQRTTASGTVRLDNVRVPASHVFAAHRVS
DQPTLNGPLSQILQAAIDAGIAHAALDDTLRFVRERSRPWIDSGVERAADDPLTIRETGRLVIQLHAADALLERAARTLD
ALAAQSELSEDDVARASVAVGEAKVLTTEIALLASEKLFELAGTQATLAEHGLDRHWRNARTHTLHDPVRWKYHLVGNYY
LNGVAPARHAWN
>Mature_411_residues
SAIYETAVQPARGATARDAHLIASDAEAIDAARALAARLAEGAAERDRERRLPYEEIDWFSQSGLWAITVPKAYGGAGVS
HVTLTEVVKIVAAADPSLGQLPQNHFGLVDVIALTGTDEQKRLFFGEILKGKRFGNGFSEKGTKNVLDLKTKVIRDGDGY
RVDGTKFYSTGALFAHYVPVLGIDDARRGWLAYVPKGTPGLAVIDDWSGFGQRTTASGTVRLDNVRVPASHVFAAHRVSD
QPTLNGPLSQILQAAIDAGIAHAALDDTLRFVRERSRPWIDSGVERAADDPLTIRETGRLVIQLHAADALLERAARTLDA
LAAQSELSEDDVARASVAVGEAKVLTTEIALLASEKLFELAGTQATLAEHGLDRHWRNARTHTLHDPVRWKYHLVGNYYL
NGVAPARHAWN

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4501859, Length=357, Percent_Identity=25.2100840336134, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI4557233, Length=356, Percent_Identity=25.561797752809, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI226958412, Length=256, Percent_Identity=24.609375, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI226958414, Length=222, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=369, Percent_Identity=24.9322493224932, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534899, Length=367, Percent_Identity=22.8882833787466, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17570075, Length=283, Percent_Identity=27.5618374558304, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71990804, Length=279, Percent_Identity=24.7311827956989, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17506239, Length=225, Percent_Identity=27.5555555555556, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=372, Percent_Identity=23.1182795698925, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI32563615, Length=221, Percent_Identity=27.1493212669683, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646207, Length=249, Percent_Identity=27.3092369477912, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356377, Length=365, Percent_Identity=24.1095890410959, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 44713; Mature: 44582

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIYETAVQPARGATARDAHLIASDAEAIDAARALAARLAEGAAERDRERRLPYEEIDW
CCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FSQSGLWAITVPKAYGGAGVSHVTLTEVVKIVAAADPSLGQLPQNHFGLVDVIALTGTDE
HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCH
QKRLFFGEILKGKRFGNGFSEKGTKNVLDLKTKVIRDGDGYRVDGTKFYSTGALFAHYVP
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCCCEEECCCEEEECCHHHHHHCC
VLGIDDARRGWLAYVPKGTPGLAVIDDWSGFGQRTTASGTVRLDNVRVPASHVFAAHRVS
CCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCEECCHHHHHHHHHCC
DQPTLNGPLSQILQAAIDAGIAHAALDDTLRFVRERSRPWIDSGVERAADDPLTIRETGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCE
LVIQLHAADALLERAARTLDALAAQSELSEDDVARASVAVGEAKVLTTEIALLASEKLFE
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LAGTQATLAEHGLDRHWRNARTHTLHDPVRWKYHLVGNYYLNGVAPARHAWN
HCCCHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SAIYETAVQPARGATARDAHLIASDAEAIDAARALAARLAEGAAERDRERRLPYEEIDW
CCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FSQSGLWAITVPKAYGGAGVSHVTLTEVVKIVAAADPSLGQLPQNHFGLVDVIALTGTDE
HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCH
QKRLFFGEILKGKRFGNGFSEKGTKNVLDLKTKVIRDGDGYRVDGTKFYSTGALFAHYVP
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCCCEEECCCEEEECCHHHHHHCC
VLGIDDARRGWLAYVPKGTPGLAVIDDWSGFGQRTTASGTVRLDNVRVPASHVFAAHRVS
CCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCEECCHHHHHHHHHCC
DQPTLNGPLSQILQAAIDAGIAHAALDDTLRFVRERSRPWIDSGVERAADDPLTIRETGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCE
LVIQLHAADALLERAARTLDALAAQSELSEDDVARASVAVGEAKVLTTEIALLASEKLFE
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LAGTQATLAEHGLDRHWRNARTHTLHDPVRWKYHLVGNYYLNGVAPARHAWN
HCCCHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]