Click here to switch to the map view.

The map label for this gene is sctN [H]

Identifier: 126447182

GI number: 126447182

Start: 582323

End: 583651

Strand: Reverse

Name: sctN [H]

Synonym: BMA10247_A0627

Alternate gene names: 126447182

Gene position: 583651-582323 (Counterclockwise)

Preceding gene: 126447813

Following gene: 126446801

Centisome position: 24.81

GC content: 71.71

Gene sequence:

>1329_bases
ATGAACGCGCTGGCCGATCTGTCCCGCGTCGCCGACGCGATGGCCGCCCGACTCGCGATCGAGCCCGCCGTCGGCATGAC
CGGCAAGGTGCTCGAAGTGATCGGCACGCTCGTGCGCGTGGTCGGCCTCGAAGCGACGCTCGGCGAGCTCTGCGAGCTGC
GCGGCGCGTCGGGCGCGCTGATCCAGCATGCGGAAGTCGTCGGCTTCACGCGCAACGTCGCGCTGCTGTCGCCGTTCGGC
ACGCTCGGCGAGATCAATCGCGGCACGCGCGTGATCGGCCTGCGGCGGCCGCTGTCGGTGAAGGTCGGCAACGGCATCCT
CGGGCGCGTGATCGACAGCTTCGGCGAGCCGATCGACGGGCGCGGCGAGCTCGACTACGACGCGCTGCGCCCCGTGATCG
CGGCGCCGCCGAACCCGATGTCGCGGCGCATGGTCGACGCCTCGCTCGCGACCGGCGTGCGCATCGTCGACGGCCTGATC
ACGCTCGGCGAAGGCCAGCGCATGGGGATCTTCGCGCCCGCCGGCGTCGGCAAGAGCACGCTGCTCGGCATGTTCGCGCG
CGGCGCGTCGTGCGACGTCAACGTGATCGCGCTGATCGGCGAGCGCGGCCGCGAGGTGCGCGAGTTCGTCGAGCTGATCA
TGGGCGAGGACGGGATGGCGCGCTCGGTCGTCGTGTGCGCGACGTCCGACCGCTCGTCGATCGAACGCGCGAAGGCCGCG
TACGCGGCGACCGCGATCGCCGAGTACTTCCGCGACCAGGGCAAGCGCGTGCTGCTGATGATGGATTCGCTCACGCGCTT
CGCGCGCGCCGGCCGCGAGATCGGCCTCGCGGCCGGCGAGCCGCCCGCGCGGCGCGGCTTCCCGCCTTCCGTGTTCGCCG
AGCTGCCGCGCCTGCTCGAGCGCACCGGGATGGGCGAGCACGGCTCGATCACCGCGCTCTACACGGTGCTCGCCGAGGAT
GACTCCGGCAGCGATCCGATCGCCGAGGAAGTGCGCGGCATTCTCGACGGCCACATCATCCTGTCGCGCGAGATCGCCGC
GCGCAACCAGTATCCGGCGATCGACGTGCTCGGCAGCCTGTCGCGGATCATGCCGCAGGTCGCGACGCGCGAGCATGTCG
GCGCGGCCGGCCGGCTGCGCCAGTTGCTCGCGAAGCACCGCGAGATCGAGACGCTGTTGCAGCTCGGCGAATACCAGGCG
GGCAGCGATCCGGCCGCCGACGAGGCGGTCGCGAAGATCGACCGGATCCGTGCGTTCCTCAACCAGCGCACCGACGAATA
CTCGCCGCCCGACGCGACGCTCGCCGCGCTACACGAGCTCGTCCGATGA

Upstream 100 bases:

>100_bases
TGTGCGAATCCGATTTCGGCACCGTCGACGCGAGCCTCGATACCCAGCTGAACGCGATCCGCGCGGCGCTCGCCCGCGCG
CTCGACGACGCGGGGCGCGC

Downstream 100 bases:

>100_bases
GCGGCCGCCAACAGCGCGCGTTCGAGACGCTGCTCGCGCGGCGCGCGCAGCGCGGCGAGCGGCTGCGCGCCGAGCAGCGC
GTGCTGCGCGCCGAGCGCGA

Product: type III secretion system ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MNALADLSRVADAMAARLAIEPAVGMTGKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVALLSPFG
TLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGLI
TLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIGERGREVREFVELIMGEDGMARSVVVCATSDRSSIERAKAA
YAATAIAEYFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAED
DSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQA
GSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELVR

Sequences:

>Translated_442_residues
MNALADLSRVADAMAARLAIEPAVGMTGKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVALLSPFG
TLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGLI
TLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIGERGREVREFVELIMGEDGMARSVVVCATSDRSSIERAKAA
YAATAIAEYFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAED
DSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQA
GSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELVR
>Mature_442_residues
MNALADLSRVADAMAARLAIEPAVGMTGKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVALLSPFG
TLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGLI
TLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIGERGREVREFVELIMGEDGMARSVVVCATSDRSSIERAKAA
YAATAIAEYFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAED
DSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQA
GSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELVR

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. May function as an ATPase that is related to a transport apparatus rather than as part of a proton pump [H]

COG id: COG1157

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=427, Percent_Identity=31.615925058548, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI50345984, Length=418, Percent_Identity=30.1435406698565, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI4757810, Length=418, Percent_Identity=30.1435406698565, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI19913428, Length=318, Percent_Identity=28.6163522012579, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI19913426, Length=369, Percent_Identity=27.10027100271, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI19913424, Length=331, Percent_Identity=27.7945619335347, Blast_Score=108, Evalue=8e-24,
Organism=Escherichia coli, GI1788251, Length=440, Percent_Identity=43.8636363636364, Blast_Score=326, Evalue=2e-90,
Organism=Escherichia coli, GI1790170, Length=409, Percent_Identity=29.0953545232274, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790172, Length=425, Percent_Identity=30.3529411764706, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI1790217, Length=290, Percent_Identity=29.3103448275862, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25144756, Length=417, Percent_Identity=30.2158273381295, Blast_Score=149, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI71988080, Length=385, Percent_Identity=30.6493506493506, Blast_Score=144, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI71988063, Length=385, Percent_Identity=30.6493506493506, Blast_Score=144, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI71988074, Length=297, Percent_Identity=30.3030303030303, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17565854, Length=333, Percent_Identity=28.2282282282282, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=390, Percent_Identity=28.2051282051282, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=361, Percent_Identity=26.8698060941828, Blast_Score=108, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6322581, Length=414, Percent_Identity=30.9178743961353, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6319370, Length=434, Percent_Identity=30.8755760368664, Blast_Score=163, Evalue=4e-41,
Organism=Saccharomyces cerevisiae, GI6319603, Length=384, Percent_Identity=27.8645833333333, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6320016, Length=232, Percent_Identity=31.4655172413793, Blast_Score=93, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24638766, Length=413, Percent_Identity=31.2348668280872, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI28574560, Length=366, Percent_Identity=31.1475409836066, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24658560, Length=430, Percent_Identity=30.9302325581395, Blast_Score=142, Evalue=4e-34,
Organism=Drosophila melanogaster, GI281361666, Length=370, Percent_Identity=25.9459459459459, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646341, Length=370, Percent_Identity=25.9459459459459, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17136796, Length=370, Percent_Identity=25.9459459459459, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=29.153605015674, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583988, Length=333, Percent_Identity=27.9279279279279, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=333, Percent_Identity=27.9279279279279, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=333, Percent_Identity=27.9279279279279, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI20129479, Length=323, Percent_Identity=26.625386996904, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR004100
- InterPro:   IPR005714
- InterPro:   IPR013380 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 47143; Mature: 47143

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALADLSRVADAMAARLAIEPAVGMTGKVLEVIGTLVRVVGLEATLGELCELRGASGAL
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH
IQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDG
HHHHHHHHHCCCCCEECCCCCHHCCCCCCEEEEECCCCEEEECCCHHHHHHHHHCCCCCC
RGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKST
CCCCCHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
LLGMFARGASCDVNVIALIGERGREVREFVELIMGEDGMARSVVVCATSDRSSIERAKAA
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
YAATAIAEYFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLE
HHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSL
HCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHH
SRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
NQRTDEYSPPDATLAALHELVR
HHCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MNALADLSRVADAMAARLAIEPAVGMTGKVLEVIGTLVRVVGLEATLGELCELRGASGAL
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH
IQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDG
HHHHHHHHHCCCCCEECCCCCHHCCCCCCEEEEECCCCEEEECCCHHHHHHHHHCCCCCC
RGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKST
CCCCCHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
LLGMFARGASCDVNVIALIGERGREVREFVELIMGEDGMARSVVVCATSDRSSIERAKAA
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
YAATAIAEYFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLE
HHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSL
HCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHH
SRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
NQRTDEYSPPDATLAALHELVR
HHCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]