| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
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The map label for this gene is 126446894
Identifier: 126446894
GI number: 126446894
Start: 335150
End: 336841
Strand: Direct
Name: 126446894
Synonym: BMA10247_A0380
Alternate gene names: NA
Gene position: 335150-336841 (Clockwise)
Preceding gene: 126445832
Following gene: 126446470
Centisome position: 14.25
GC content: 73.46
Gene sequence:
>1692_bases TTGCGGACGACGAAATCTCCCGGCATCTCCGTGATTCGGCAGCGGCTCGCCGTTGCGCTGCCGCTTGCGTTGACGCTCAC CCTCGCGAGCTGCGGCGGTGACGATCTGACGCCCGCCGCGCAGCGCTGGGCGATGCCCGGCACCGAACTGCCGCTCGGGC CGCAGGGCCTCGCGCAGAGCGTGTCGACGCAGACGCTCGCCGCAGGCGTCGCCTATTACCAGATCAAGCGCGGCGCGGCG AGCGCGGCCGATTTCTGGACCGTCAACCTCGGCTTCTACGCGACGCAGGCCGCGGCGCAGGCCGATGCGGCGAATCTCGC GGCGGCCGGCTTCGCGACGCGCGTCGACGCGTCGGCGGGCACCGACCTGCAGGGCAAGGTGCTCGGCTACTGGCTGTCGG CCGGCCGCTACGCGACGCAGGCCGAGGCGACGGCGGCCGCCGCGCGCATCGCGCAGGCCACGCAGAACCGCTACAAGCCG GGCACGCGGCATACGTCGCTCGCCGGCGCGCCGACGACGGGGCCGTGGATCGTCAACGTGCTCGCGATCGACCCGTCGCG CGCCGGCGCGGCGCTGTCGCTCGCGCTGCCGGGCGGCAACGATCTCGGTGCGGGCGGCGAGACGGTTTCGGCCGCGCGGG CGCGTGTGAACGCGCTCGCCGGCGTCAACGGCGGCTTTTTCACGAACATCAATCCGTTCGGCGCGCCGCTGCCGCCGCGC TCGCCCGTCGGCGCGACGGTAGTCGACGGGCGGCTCGTCGCGGCCGCGATCGGCAGGCGCCCCGGCCTGCTGCTCGCGCG CGACGCGAACGGCCGCCAACGCGCGACGGTCGTGCGCAATCTCGCGACGGCGATCACGCTGACCGACGCGCAAGGCAGTG CGATCGCGGTCCAGACGCTGAACCGGCCGATCCTCGGTACGGTCGTCAATTGCGGCGCGCAGGCGCGCACGCCGACGAGC GAGCCGGCGCAGGACACGGTGTGCACGAACTACGATGACCTCGTGATGTACGACTCGCTATATCTGCGCGGCGGTGCGTC GAACACGCTCGTCGACGCCGGCTACCAGGGCGCGCGATACGAACTCGTGGTCGACGCGAACGGCGCCGTCGTCGCCGGCC ATGCGACGCTCGGCGCGCCGCCGCCGCCGAACGGCTACGTGCTGCAGGGGCTCGGCGCGAGCGCCGCGTGGCTGCAGGCG CATGCGACGCCGGGCACGCGCCTCGCGGTATCGCGCCGGCTGTCGGCCGACGGCGCGGATCTCGCGCTCGCGTCGGGCAC GTCGCTCGTCGAGGCGGGGCCGACGCTGTCCGTGCCGAATCTCGCGCAAAGCGCCGCGCAAGAGGGCTTCGCGCCGACGG TGGGCGGCGTCGACGCGGGCGAAGGCGCCGCGGCGAACGGCAACTGGTACAACGGCTGGTATGTCGCGCGCAATGGGCGC ACCGCGGCGGGCGTCGCGGCGGACGGCACGATCCTGCTCGTCGAGATCGACGGCCGGCAGCCCACGTTGAGCGTCGGCAC GAGCATTCCGGAGACGGCGGCGGTGATGGCATGGCTCGGTGCGACGTCGGCCGTCAATCTCGACGGCGGCGGCTCGAGCA ACATGGTGGTCGGCGGCAAGATGGTCGGACATCCGTCCGACGCTGTGGGCGAGCGGGGCGTCGGCGATACGCTGATGCTG CTGCCGGGCTGA
Upstream 100 bases:
>100_bases CGCATCGTCTCGCGTTTAATCGCGCCGTCACGGGCGGTTCGTATACTCGGTCCCCGCCGCGCGCCGCCTCGCCGCGGACG CAATCGACTGAGGAAAAATC
Downstream 100 bases:
>100_bases TCGCGCAACCGTTTGCGCAGCCCCCGCTGCGCGCACGGCATGCATGGCATGCGCGGCGCGCGCCGCGCGGTTAATGGCGC AGGTCGGTCCTCAGCCGCGT
Product: putative lipoprotein
Products: NA
Alternate protein names: Exopolysaccharide Biosynthesis Protein; Sporulation Domain-Containing Protein; Copper Amine Oxidase Domain-Containing Protein
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MRTTKSPGISVIRQRLAVALPLALTLTLASCGGDDLTPAAQRWAMPGTELPLGPQGLAQSVSTQTLAAGVAYYQIKRGAA SAADFWTVNLGFYATQAAAQADAANLAAAGFATRVDASAGTDLQGKVLGYWLSAGRYATQAEATAAAARIAQATQNRYKP GTRHTSLAGAPTTGPWIVNVLAIDPSRAGAALSLALPGGNDLGAGGETVSAARARVNALAGVNGGFFTNINPFGAPLPPR SPVGATVVDGRLVAAAIGRRPGLLLARDANGRQRATVVRNLATAITLTDAQGSAIAVQTLNRPILGTVVNCGAQARTPTS EPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARYELVVDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQA HATPGTRLAVSRRLSADGADLALASGTSLVEAGPTLSVPNLAQSAAQEGFAPTVGGVDAGEGAAANGNWYNGWYVARNGR TAAGVAADGTILLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGKMVGHPSDAVGERGVGDTLML LPG
Sequences:
>Translated_563_residues MRTTKSPGISVIRQRLAVALPLALTLTLASCGGDDLTPAAQRWAMPGTELPLGPQGLAQSVSTQTLAAGVAYYQIKRGAA SAADFWTVNLGFYATQAAAQADAANLAAAGFATRVDASAGTDLQGKVLGYWLSAGRYATQAEATAAAARIAQATQNRYKP GTRHTSLAGAPTTGPWIVNVLAIDPSRAGAALSLALPGGNDLGAGGETVSAARARVNALAGVNGGFFTNINPFGAPLPPR SPVGATVVDGRLVAAAIGRRPGLLLARDANGRQRATVVRNLATAITLTDAQGSAIAVQTLNRPILGTVVNCGAQARTPTS EPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARYELVVDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQA HATPGTRLAVSRRLSADGADLALASGTSLVEAGPTLSVPNLAQSAAQEGFAPTVGGVDAGEGAAANGNWYNGWYVARNGR TAAGVAADGTILLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGKMVGHPSDAVGERGVGDTLML LPG >Mature_563_residues MRTTKSPGISVIRQRLAVALPLALTLTLASCGGDDLTPAAQRWAMPGTELPLGPQGLAQSVSTQTLAAGVAYYQIKRGAA SAADFWTVNLGFYATQAAAQADAANLAAAGFATRVDASAGTDLQGKVLGYWLSAGRYATQAEATAAAARIAQATQNRYKP GTRHTSLAGAPTTGPWIVNVLAIDPSRAGAALSLALPGGNDLGAGGETVSAARARVNALAGVNGGFFTNINPFGAPLPPR SPVGATVVDGRLVAAAIGRRPGLLLARDANGRQRATVVRNLATAITLTDAQGSAIAVQTLNRPILGTVVNCGAQARTPTS EPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARYELVVDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQA HATPGTRLAVSRRLSADGADLALASGTSLVEAGPTLSVPNLAQSAAQEGFAPTVGGVDAGEGAAANGNWYNGWYVARNGR TAAGVAADGTILLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGKMVGHPSDAVGERGVGDTLML LPG
Specific function: Unknown
COG id: COG4632
COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56545; Mature: 56545
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00579 RIBOSOMAL_L29 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTTKSPGISVIRQRLAVALPLALTLTLASCGGDDLTPAAQRWAMPGTELPLGPQGLAQS CCCCCCCCHHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHH VSTQTLAAGVAYYQIKRGAASAADFWTVNLGFYATQAAAQADAANLAAAGFATRVDASAG HHHHHHHHHHEEEEEECCCCCCCCEEEEECCEEEHHHHHHCCHHHHHHHCCCEEECCCCC TDLQGKVLGYWLSAGRYATQAEATAAAARIAQATQNRYKPGTRHTSLAGAPTTGPWIVNV CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE LAIDPSRAGAALSLALPGGNDLGAGGETVSAARARVNALAGVNGGFFTNINPFGAPLPPR EEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC SPVGATVVDGRLVAAAIGRRPGLLLARDANGRQRATVVRNLATAITLTDAQGSAIAVQTL CCCCCEEECCEEEEHHHCCCCCEEEEECCCCCHHHHHHHHHEEEEEEECCCCCEEEEEEC NRPILGTVVNCGAQARTPTSEPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARY CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCEE ELVVDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQAHATPGTRLAVSRRLSADGAD EEEEECCCCEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCC LALASGTSLVEAGPTLSVPNLAQSAAQEGFAPTVGGVDAGEGAAANGNWYNGWYVARNGR EEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC TAAGVAADGTILLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGK EEECEECCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCEEECCE MVGHPSDAVGERGVGDTLMLLPG EECCCCHHHCCCCCCCEEEEECC >Mature Secondary Structure MRTTKSPGISVIRQRLAVALPLALTLTLASCGGDDLTPAAQRWAMPGTELPLGPQGLAQS CCCCCCCCHHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHH VSTQTLAAGVAYYQIKRGAASAADFWTVNLGFYATQAAAQADAANLAAAGFATRVDASAG HHHHHHHHHHEEEEEECCCCCCCCEEEEECCEEEHHHHHHCCHHHHHHHCCCEEECCCCC TDLQGKVLGYWLSAGRYATQAEATAAAARIAQATQNRYKPGTRHTSLAGAPTTGPWIVNV CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE LAIDPSRAGAALSLALPGGNDLGAGGETVSAARARVNALAGVNGGFFTNINPFGAPLPPR EEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC SPVGATVVDGRLVAAAIGRRPGLLLARDANGRQRATVVRNLATAITLTDAQGSAIAVQTL CCCCCEEECCEEEEHHHCCCCCEEEEECCCCCHHHHHHHHHEEEEEEECCCCCEEEEEEC NRPILGTVVNCGAQARTPTSEPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARY CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCEE ELVVDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQAHATPGTRLAVSRRLSADGAD EEEEECCCCEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCC LALASGTSLVEAGPTLSVPNLAQSAAQEGFAPTVGGVDAGEGAAANGNWYNGWYVARNGR EEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC TAAGVAADGTILLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGK EEECEECCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCEEECCE MVGHPSDAVGERGVGDTLMLLPG EECCCCHHHCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA