Click here to switch to the map view.

The map label for this gene is yhdP [H]

Identifier: 126446521

GI number: 126446521

Start: 280310

End: 281650

Strand: Reverse

Name: yhdP [H]

Synonym: BMA10247_A0320

Alternate gene names: 126446521

Gene position: 281650-280310 (Counterclockwise)

Preceding gene: 126447343

Following gene: 126446908

Centisome position: 11.97

GC content: 66.52

Gene sequence:

>1341_bases
TTGATACAGATCTTCGCGCTCATCGGCGCGTTGCTCCTCGTGGCCCTCAACGGCTTTTTCGTCGCCGCCGAATTCGGTCT
CGTCAAACTGCGCGCGACGCGCGTGAAAACCCTCGCCCGCCAGCACGGCCTGCGCGGACGCATCCTGCGGATCGTCCATG
CGCGGCTCGATGCGTACCTGTCCGCCTGCCAGCTCGGCATCACGCTCGCGTCGCTCGGCCTCGGCTGGATCGGCGAGCCG
GCGTTCGCCGCGCTGCTATCGCCCGTGCTCGCGTTCGCGGGCGTCGAATCGGAAAAGCTCGTGCATCTGATCTCGCTCGT
GTTCGCGTTCTCGGTGATCTCGTTCCTGCACATCGTCGTCGGCGAGCTCGCGCCGAAATCGATGGCGATCCGTCAGGCCG
AGAAGACGGGCCTCTGGGTCGCGCTCCCGCTCTATGCGTTCTACTGGGCGATGTATCCGGCGATCTGGGTGCTCAACACG
AGCGCGAACGCGGTGCTGCGGCTCGCGGGGCTGTCCGCCGATCACGGCGGCGACGCGCACTACTCGACCGACGAGCTGAA
GCTGATCCTGCGCAGCCGCCGCAACGCGGCCGGCGCCGCGAAAGCGCCGAAGCACGCGTACAGCAACGACGAATGGAACA
CGCTCGCGCACTCGCTCGATTTTTCGTCGATGACCGTATCGGATCTGATGCGCCCCGCGCACGAGATGGTGGGCCTGCGC
CGCGATCTGCCGCTCGCGGACAACATGGAAGTCGTCGCGCGCCACCGCTTCAGCCGCTATCCGCTGTTCGACGACCAATC
GCGCGAAACCGTGAACGGCCTCATCCACCTGAAGGATCTGCTGCTCGCGCGGCACGCGGGCGCGGCGCTCGCCGATCTGT
CCGATTATGTGCGCCCGGTGCAGTACGTGAAGCCGGACACGCCCGCGCTCGACCTGTTCCGGCGCTTCCGCAAGGGCGCG
CCGCACTTCGCGCTCGTCGGCAAGAAAGGCGAGAAGCCGATCGGCTTTCTCACGCTCGACAACCTGCTCGGCGCGCTCGT
CGGCCAGATCCACGACGAATTCCGGCAGGGCGATTCGGACTGGAGCCGGCTCGACGACGGCACGCTGATCGGCAAGGGCA
GCCTGCCCGTCGTGTCGCTCGAGCAGGCGCTCGGCATCGACATCGACGAAGGGCGCGCGGAATCGGTCGGCGGCCTCGTC
ATTCAGGCGCTCAACGATCTGCCGACGGAAGGCCGGCGCGTATCGTTCGATCGCTTCGACATCGTCGTGAAAAAGATGAT
CGGGCCGCGAATCGTGCTCGTGCGCGTGTATCCGAAGTCGCCCAAGGAAGCGGACGAGTGA

Upstream 100 bases:

>100_bases
GCCGCTCGCGCGTGATCGGCCGCGCGCGTCGCGACGCTCGATATTACGTTTACCTTTCCAACCTTATACTGTCGCTTCGT
TCATTCTCGGAGTTCCTTCG

Downstream 100 bases:

>100_bases
GCGCGCGCGATGGCGACCGCGCCGCGGATCACGACATGCACGACGACCTCGCGCTGCCGCCGTACTACCTGATCACGCCG
GAGCCCGCCTCGGGTTCCGA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLAFAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKSPKEADE

Sequences:

>Translated_446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLAFAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKSPKEADE
>Mature_446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLAFAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKSPKEADE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=395, Percent_Identity=33.6708860759494, Blast_Score=238, Evalue=1e-62,
Organism=Escherichia coli, GI145693175, Length=433, Percent_Identity=20.7852193995381, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790664, Length=426, Percent_Identity=23.4741784037559, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082033, Length=239, Percent_Identity=23.8493723849372, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786879, Length=238, Percent_Identity=25.2100840336134, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48946; Mature: 48946

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYL
CEEHHHHHHHHHHHHHCCHHEEEHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SACQLGITLASLGLGWIGEPAFAALLSPVLAFAGVESEKLVHLISLVFAFSVISFLHIVV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNTSANAVLRLAGLSADHGGDAH
HHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC
YSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPV
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QYVKPDTPALDLFRRFRKGAPHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSD
HHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCH
WSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLVIQALNDLPTEGRRVSFDRFD
HHHCCCCEEEECCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHH
IVVKKMIGPRIVLVRVYPKSPKEADE
HHHHHHCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYL
CEEHHHHHHHHHHHHHCCHHEEEHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SACQLGITLASLGLGWIGEPAFAALLSPVLAFAGVESEKLVHLISLVFAFSVISFLHIVV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNTSANAVLRLAGLSADHGGDAH
HHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC
YSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPV
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QYVKPDTPALDLFRRFRKGAPHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSD
HHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCH
WSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLVIQALNDLPTEGRRVSFDRFD
HHHCCCCEEEECCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHH
IVVKKMIGPRIVLVRVYPKSPKEADE
HHHHHHCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]