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The map label for this gene is sdhC [H]

Identifier: 126446434

GI number: 126446434

Start: 450072

End: 450413

Strand: Direct

Name: sdhC [H]

Synonym: BMA10247_A0499

Alternate gene names: 126446434

Gene position: 450072-450413 (Clockwise)

Preceding gene: 126446969

Following gene: 126445800

Centisome position: 19.13

GC content: 59.65

Gene sequence:

>342_bases
ATGCCGCTCGCGGCTCGGGTTTCGATTCTGCACCGGGTCAGCGGCGCCCTGCTGTTCCTGTTCCTTCCTTTCCTGCTGTA
CCTCTTCGACCAGAGCCTCACGTCCGAGCTGAGCTTCGAAGTCTTCAAGGCCTTCCTCTCCAACATCATCGTCAAGCTGA
TCGTCCTCGCGCTGTCGTGGGCGTTCCTGTTCCACTTCTGCGCCGGCATCCGCCATCTGATGATGGACATGAACCACGAC
GCGGTGTCGAAGGAACGCGGCAAGAAGACGTCGGTCGTCGTGTTCGCGGTGTCGACCCTTCTCACGATCGCCGTCGCGCT
CAAACTGTTCGGAGCATTCTAA

Upstream 100 bases:

>100_bases
TGTGACAACATCGTAGGGGTCTAGCATGTCTGAAACAGTAAGAAAACCGAGGCCGGAGTACCGGAACATCGGGTTCGGCG
ACATCACGCTCAAATACCGT

Downstream 100 bases:

>100_bases
GAAAATGGCAGCGAATAACCGTATCGGCTCGAAGCGCCTCGTCGTCGGCGCACACTATGGTCTGCGCGACTGGCTGGCGC
AGCGCGTCACCGCGAGCGTG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHD
AVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF

Sequences:

>Translated_113_residues
MPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHD
AVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF
>Mature_112_residues
PLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHDA
VSKERGKKTSVVVFAVSTLLTIAVALKLFGAF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=102, Percent_Identity=36.2745098039216, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12636; Mature: 12505

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]