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The map label for this gene is ywbI [H]

Identifier: 126445813

GI number: 126445813

Start: 551228

End: 552139

Strand: Direct

Name: ywbI [H]

Synonym: BMA10247_A0607

Alternate gene names: 126445813

Gene position: 551228-552139 (Clockwise)

Preceding gene: 126446665

Following gene: 126446232

Centisome position: 23.43

GC content: 67.76

Gene sequence:

>912_bases
ATGCGTTTCGATATCACCGATCTGCGTCTGTTCGTCTCCGTCATCGAGGCGGGCAGCATCACGCACGGCGCGAGCCGGGT
CAATCTGGCGCTCGGCTCCGCAAGCGGGCGCATCAAGCAGATGGAGGAGACTGCCGGAGTGGCGCTCCTCGTGCGCGAAC
GGCTCGGCGTGAAGCCGACCGAGGCGGGGCACACGTTGCTGCGCCATGCGCGCGCGACGCTTGCGTCGATGCAGCGCCTC
ACCGACGATCTCGGCGAATTCGCAAACGGGCTGCGCGGCACGGTGCGGCTGTTGACCAACACCAACGCGCTGACCGAATT
CCTGCCCGGCCCCATCGCGCGCTTTCTCGCGCAGCATCGCAACGTGAGCGTCGAACTGGAGGAAATGCTGAGCCACGAGA
TCGTCGCGGCGCTCGTCGAAGGCGTCGCGGACATCGGCATCGTCGCGGCGCGCGAGGACATAAGCGGGCTGCAGAGCTTT
CCGTTCGCGACCGACCGCCTGTGCGCGGTCGTGCTCGCGTCGCAGCCGGAGTTCGCGAACGCGCGCGACGTATCGTTCGC
GTCGCTGCTCGACTACGATTTCGTCGGCTACGCGGCCGGCGCGGCGATCCAGACGTATCTGGAAGCGCATGCGCGCGAGT
TGCATCGGCGGCTCCGGCCGCGCATTCATCTGCGCAGCTTCGATGCGATCTGCCGCCTCGTCGAGAACGGCGTCGGCGTA
TCGGTGGTGCCCGAATCCGCCGCGCGGCGCTGCAGGCGCACGATGTCGATCAAGACGCTCGCGCTGCGCGAGAACTGGGC
GCTGCGCGAAATGAGGGTGTGCGTGGCTGATGTCGACGCGTTGCCGATGTACGCGCGGCAGTTGCTCGGCCATCTCGTCG
AAAGCGGCCGGGCGTTCGCGCGCCGCCGTTAG

Upstream 100 bases:

>100_bases
TCGTTCGGCACGTTGTGAAAACCCCCGGTGTCGTTCACAATGCCCGACAGCCGACGCGAGCCTTCGATCCGGCCGTAGGC
TCGTCGATCCGGGAGGGCGC

Downstream 100 bases:

>100_bases
CCTTCCGATTCGCCGAAGGCTGCCCCCGAAAATGCCGCATTGTCCGGCGCGCGACGGGTGGCGACAATGCACTCGTCGTT
TCGCTCAACGAGGAGTGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDISGLQSF
PFATDRLCAVVLASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR

Sequences:

>Translated_303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDISGLQSF
PFATDRLCAVVLASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR
>Mature_303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDISGLQSF
PFATDRLCAVVLASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=23.7704918032787, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=25.6198347107438, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787589, Length=307, Percent_Identity=25.4071661237785, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=278, Percent_Identity=22.6618705035971, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33322; Mature: 33322

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
EAGHTLLRHARATLASMQRLTDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHC
NVSVELEEMLSHEIVAALVEGVADIGIVAAREDISGLQSFPFATDRLCAVVLASQPEFAN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
ARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCE
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFA
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
CCC
>Mature Secondary Structure
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
EAGHTLLRHARATLASMQRLTDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHC
NVSVELEEMLSHEIVAALVEGVADIGIVAAREDISGLQSFPFATDRLCAVVLASQPEFAN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
ARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCE
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFA
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]