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The map label for this gene is hrcU [H]

Identifier: 126445400

GI number: 126445400

Start: 2210153

End: 2211415

Strand: Reverse

Name: hrcU [H]

Synonym: BURPS668_A2282

Alternate gene names: 126445400

Gene position: 2211415-2210153 (Counterclockwise)

Preceding gene: 126443227

Following gene: 126444692

Centisome position: 70.71

GC content: 70.55

Gene sequence:

>1263_bases
ATGGGCCGCAAGGTAGCAGCGCGCCGGGCGCGGGGACGCGGCGATGCGAAGCGCGCGCGCCGGATGCGAAGCACGGCGCG
CGCTTCGCATCCGGCGGCGCGGCTTCGGCTCGGCGCGCGCGCGGCGCGCGGCGCGCCGCTAACGTACGCGGCATCTCCGA
CTCCCGAAGGAAACGCGGCGATGGCCGAAGAGAAAACCGAAGAGCCCACCGAGAAGAAGCTGAAGAAGGTGCGCGAGAAG
GGCCAGGTCGCCAAGAGCAAGGACATCGCCGACGCGATGACGCTCGCGGCCGCGATCGGCGTGCTCACGGCGTGCGAATC
GATGCTCACGGGCGGCCTCTCGCGCGCGGTTCGCACCGCGCTCGACTTCGTGCGCGGCGAGCGCACCCCGCAGGCGACGC
TCGCCGCGCTGCACGATCTCGCCGCGAGCGCCGCGCTGACGATGCTGCCGTTCGTCGCCGCCGCGATCGTCGCGGGCATC
GTGTCGCAGGCGCCGCAGGCGGGTTTCCTGATCACGCTCGAGCCCGTGATGCCGAAGTTCGACGCGATCAATCCGATGGC
GGGCATCAAGCGGATCTTCTCGCTGAAGTCGCTGCTCGAGCTCGTGAAGATGATCGTCAAGGCGCTCGTGCTCGCGTGCG
TGGCATGGAAGATGATGACCTCGCTGTTTCCGCTCGTCGTCGCGAGCGTGTACGAAGCGACGCCGCAGCTCGCGCGCGTG
CTGTGGACGGTGCTGATGAAGCTGCTCGGCACCGTGTCGGTCGTCGTCGCGGTGCTCGCGGCGGCCGATTACAAGATCGC
ACGCGTGATGTTCGTTCGCGAGAACCGGATGACGAAGGAGGAAGTCAAGCGCGAGCACAAGGAGAGCGACGGCGATCCGC
ACACGAAGGGCGAGCGCCGCCGGCTCGCGCGCGAGATCGCGACGAGCGCGCCGCCGCGGCAGCGGGTCGGCCAGGCGAAC
GTGCTCGTCGTCAACCCGACGCACTACGCGGTCGCGATCCGCTATGCGCCCGACGAGCATCCGCTGCCGCGGGTCATCGA
GAAGGCCGTCGACGACGGCGCGCTCGCGCTGCGCCGCCACGCGCACGCGCTCGGCGTGCCGATCGTCGGCAATCCGAGCG
TCGCGCGCGCGCTGTACCGCGTCGAGCGCGACGCGTCGATTCCCGAAGAGCTGTTCGAGACGGTGGCCGCGATCCTGCGC
TGGGTCGAGTCCCTCTCGGGCGCGCGCGCGGTCGCCGCCGTTTCCTCCGCGAGGTCGTCATGA

Upstream 100 bases:

>100_bases
CGCCGCGTGGCTGCATCGCAGGTAGGTCGGCCGGGATTCGTCCATGGTGTGCGCTCCGTGTCGCCGCGTCGGCGGCGCAT
GACGTTGAGGGAAAAGGCGT

Downstream 100 bases:

>100_bases
CGCTGAAATCCCTCAAACTTCCCGCCGGCGGCGAGGTCGGCATCACGGTGCTCGTCGTCGCGATCGTCTCGCTGATGATC
CTGCCGCTGCCGCCCGAGGT

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MGRKVAARRARGRGDAKRARRMRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAAMAEEKTEEPTEKKLKKVREK
GQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGI
VSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQRVGQAN
VLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILR
WVESLSGARAVAAVSSARSS

Sequences:

>Translated_420_residues
MGRKVAARRARGRGDAKRARRMRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAAMAEEKTEEPTEKKLKKVREK
GQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGI
VSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQRVGQAN
VLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILR
WVESLSGARAVAAVSSARSS
>Mature_419_residues
GRKVAARRARGRGDAKRARRMRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAAMAEEKTEEPTEKKLKKVREKG
QVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGIV
SQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVL
WTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQRVGQANV
LVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRW
VESLSGARAVAAVSSARSS

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=361, Percent_Identity=30.4709141274238, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 45207; Mature: 45076

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKVAARRARGRGDAKRARRMRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAA
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCH
MAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
DAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRH
HHHHHHHHCCCCHHHCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
AHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRWVESLSGARAVAAVSSARSS
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GRKVAARRARGRGDAKRARRMRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAA
CCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCH
MAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDFVRGERTPQATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
DAINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LWTVLMKLLGTVSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRH
HHHHHHHHCCCCHHHCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
AHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRWVESLSGARAVAAVSSARSS
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]