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The map label for this gene is hrcV [H]

Identifier: 126444692

GI number: 126444692

Start: 2208084

End: 2210156

Strand: Reverse

Name: hrcV [H]

Synonym: BURPS668_A2281

Alternate gene names: 126444692

Gene position: 2210156-2208084 (Counterclockwise)

Preceding gene: 126445400

Following gene: 126443928

Centisome position: 70.67

GC content: 69.13

Gene sequence:

>2073_bases
ATGACGCTGAAATCCCTCAAACTTCCCGCCGGCGGCGAGGTCGGCATCACGGTGCTCGTCGTCGCGATCGTCTCGCTGAT
GATCCTGCCGCTGCCGCCCGAGGTGATCGACGTGCTGCTCGGCGTGAACATCGCGATCAGCGTCACGCTGCTGATGGTGA
CGATGTACGTCGGCAGCATCGTGTCGCTGTCGGTGTTCCCGTCGATCCTGCTGTTCACGACGCTGTACCGGCTGTCGCTG
AACATCGCGTCGACGAAATCGATCCTGCTGCACGCGAACGCGGGCGACATCATCGAGAGCTTCGGCGAGCTCGTCGTCGG
CGGCAATCTCGTCGTCGGCCTCGTCGTGTTCCTGATCATCACGATCGTGCAGTTCATCGTGATCGCGAAGGGCTCGGAGC
GCGTGGCCGAAGTCGGCGCGCGCTTCACGCTCGACGCGATGCCGGGCAAGCAGATGAGCATCGACGCGGATCTGCGCGCG
AACATCCTGACGCCGGACGAGGCGCGCCGCAAGCGCGCGACGCTCGCCAAGGAAAGCCAGTTGCACGGCGGGATGGACGG
CGCGATGAAGTTCGTCAAGGGCGACGCGATCGCCGGGCTCATCATCACGCTCGTGAACATCGTCGCGGGCATCGCGATCG
GCGTGATGTACCACGGGATGACGGCGGGGGACGCCGCGAACCGCTTCTCGATCCTGTCGGTCGGCGATGCGATGGTGTCG
CAGATTCCGTCGCTGCTGATCTCGGTCGCGGCCGGCGTGATGATCACGCGCGTCGCCGACGATCACGACGACGGCGACGG
CACGTCGCTCGGCTCGGAGATCGCCAGGCAACTGGGCGGCAGCCATCGCGCGCTGTATTTCGCCGCGGTGCTGCTGATCG
GCTTCGCGGCGGTGCCCGGCTTTCCGGCCGCGCTCTTCGTGCTGCTGTCGGGCATGCTCGCGTTCGCCGGCTACCGGCTG
CAAAAGGGCGCGCGGCGCACGACCGCGCGCGGCGAGCCGGTGATCGCGCTGCAGCGCGCGGGCGCGAAGAGCAGCACGCC
GTCGATCCTGCCGCGCGCGCCGCTATTCACCTGCGCGATCGGCGTGCGCGTCGCGCCCGATCTCGTCGCCCGGCTCGCGC
CCGCCGCGCTCGACCGCGCGTTCGACGAGGAGCGCGCGAAGCTGCAGGAAGAACAGGGGCTGCCGTTTCCCGGCATCACG
CTGTGGACGAGCGACGCGCTGCCCGCGTCGACGTGCGAGATCCTGATGCGCGACGTGCCGCAGGCGCGGCTCGAGTTGCC
GGCCGACCAGACGATGCTGCCCGACGCGGCGTCGGACCCGGCGCTCGCCGGCCGCTGCACGAAGCGCGGGCCCGCGGGCG
GCCTCGCCGAGAGCTACTGGATCGACGACAAGGCGGTGCCGGCCGGCGCGCGCGCGTGGCGCGCCGAGCAGGTGGTCGCG
CACGAGACGATCGCGCTGCTCAGGCGCAACGCGCACCTGTTCCTGGGTATTCAGGAAGCCCAATGGATACTCGACCAGCT
CGGCGTCGATTATCCGGGGCTCGTCGCCGAAGTGCAGAAGGCGCTGCCGACGCAGCGCATCGCCGACGTGCTGCGCCGCC
TGCTCGAGGAACACATTCCGATCCGCAACGCGCGCGACATCATGGAGAGCCTCGTCGCATGGGGGCCGAAGGAGAAGGAC
ATGCTGATGCTCGCCGAGTACGTGCGCGGCGACCTGTCGCGCTATCTCGCCTATCGCGCGGCGCGCGGCGCGCGGCAGTT
GCCGGCCGTGCTGCTCGACATGGCGGTCGAGCAGCACATCCGGCAGTCGATCAAGCAGACGCCCGCGGGCAACTTTCTCG
CGCTGCCGCCCGAGCAGGTGCGCTATCTCGTCGACAGCATCGCGTCGTTCGTCGGCGAAGCGCCGCGCGACGATGTCGCG
CTCGTCACGTCGATGGACGTGCGCCGCTACACGCGGCGCATGATCGAGGCGCGGCTCGACTGGCTGCCCGTCTATTCGTA
TCAGGAGCTCGGCGACCAGGTGCAGTTGCAGCCGGTCGGCCGCGTGACGATGCCGACGGCGGCCCACGCATGA

Upstream 100 bases:

>100_bases
TTCCCGAAGAGCTGTTCGAGACGGTGGCCGCGATCCTGCGCTGGGTCGAGTCCCTCTCGGGCGCGCGCGCGGTCGCCGCC
GTTTCCTCCGCGAGGTCGTC

Downstream 100 bases:

>100_bases
GCGCCGCCGATCTGAGGCCCGTGCGGATCATCGCGGGCGCGCCCGCGGCCGAGCCGGCCGGTGCGCCGGCGCCGCGAGCC
GCGCGGCGCGGCTTCGACTA

Product: HrcV family type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 689

Protein sequence:

>690_residues
MTLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSIVSLSVFPSILLFTTLYRLSL
NIASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLIITIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRA
NILTPDEARRKRATLAKESQLHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVS
QIPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPGFPAALFVLLSGMLAFAGYRL
QKGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAIGVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGIT
LWTSDALPASTCEILMRDVPQARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVA
HETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKALPTQRIADVLRRLLEEHIPIRNARDIMESLVAWGPKEKD
MLMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHIRQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVA
LVTSMDVRRYTRRMIEARLDWLPVYSYQELGDQVQLQPVGRVTMPTAAHA

Sequences:

>Translated_690_residues
MTLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSIVSLSVFPSILLFTTLYRLSL
NIASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLIITIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRA
NILTPDEARRKRATLAKESQLHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVS
QIPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPGFPAALFVLLSGMLAFAGYRL
QKGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAIGVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGIT
LWTSDALPASTCEILMRDVPQARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVA
HETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKALPTQRIADVLRRLLEEHIPIRNARDIMESLVAWGPKEKD
MLMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHIRQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVA
LVTSMDVRRYTRRMIEARLDWLPVYSYQELGDQVQLQPVGRVTMPTAAHA
>Mature_689_residues
TLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSIVSLSVFPSILLFTTLYRLSLN
IASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLIITIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAN
ILTPDEARRKRATLAKESQLHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVSQ
IPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPGFPAALFVLLSGMLAFAGYRLQ
KGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAIGVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGITL
WTSDALPASTCEILMRDVPQARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVAH
ETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKALPTQRIADVLRRLLEEHIPIRNARDIMESLVAWGPKEKDM
LMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHIRQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVAL
VTSMDVRRYTRRMIEARLDWLPVYSYQELGDQVQLQPVGRVTMPTAAHA

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=599, Percent_Identity=35.3923205342237, Blast_Score=325, Evalue=8e-90,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 74146; Mature: 74014

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VSLSVFPSILLFTTLYRLSLNIASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLII
HHHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRANILTPDEARRKRATLAKESQ
HHHHHHHHCCCCHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVS
HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHH
QIPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
FPAALFVLLSGMLAFAGYRLQKGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAI
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
GVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGITLWTSDALPASTCEILMRDVP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCC
QARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVA
HHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH
HETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKALPTQRIADVLRRLLEEHIP
HHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC
IRNARDIMESLVAWGPKEKDMLMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVALVTSMDVRRYTRRMIEARLD
HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
WLPVYSYQELGDQVQLQPVGRVTMPTAAHA
HCCCCCHHHCCCCEEEEECCCEECCCCCCC
>Mature Secondary Structure 
TLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSI
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VSLSVFPSILLFTTLYRLSLNIASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLII
HHHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRANILTPDEARRKRATLAKESQ
HHHHHHHHCCCCHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVS
HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHH
QIPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
FPAALFVLLSGMLAFAGYRLQKGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAI
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
GVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGITLWTSDALPASTCEILMRDVP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCC
QARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVA
HHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH
HETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKALPTQRIADVLRRLLEEHIP
HHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC
IRNARDIMESLVAWGPKEKDMLMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVALVTSMDVRRYTRRMIEARLD
HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
WLPVYSYQELGDQVQLQPVGRVTMPTAAHA
HCCCCCHHHCCCCEEEEECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]