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The map label for this gene is glxA [H]

Identifier: 126444687

GI number: 126444687

Start: 801937

End: 803034

Strand: Reverse

Name: glxA [H]

Synonym: BURPS668_A0827

Alternate gene names: 126444687

Gene position: 803034-801937 (Counterclockwise)

Preceding gene: 126442957

Following gene: 126443031

Centisome position: 25.68

GC content: 66.94

Gene sequence:

>1098_bases
TTGCGCTCGATTTCACAATACGCGAGCCGAGCGCCCGGCCGCATCAAGATCAGATTCAAGGAACGCTTCCCCATGTCGCC
CGACCGCACCGCGTCGCTGTCTCATTTCGCGTTCATGCCGCTGCCCAACTTCACGATGATCGCGTTCACGAACGCGATCG
AAGTGCTCAGGATGGCCAACTACCTGAGCGGGCAGCCGCTGTACCGCTGGTCGATCATCAGCCCGCAGGGCGGCATGGTC
ACGGCGAGCAACGGGCTCGCGGTCGACACCGGCCCGGCCGAATGCGCGGGGCAGCCGGACATCGTGTTCGTCTGCGGCGG
CGTGGACGTGCAGCGCGCGACGCAACCCGAGCATCTCGCGGCGCTGCGCCGCTTCGCGCGCGCGGGCGTCGCGCTCGGCA
GCCTGTGCACCGGCACCTATGCGCTCGCGAAGGCGAGGCTCCTCGCCGGCTACGCCTGTGCGATCCATTGGGAAAATCTG
TCGGCGCTGAAGGAAGAATTTCCCGATACGCGCTTCCTCAAGGAACTGTTCGTGATCGACCGCGATCGCGTGACGTGCAC
GGGCGGCGTCGCGCCGCTCGACATGATGCTGAACCTGATCGCGTCGCGCATCGGCACCGCGCGCGTCACGCAGATCGCCG
AGCAGTTCATCGTCGAGCACGTGCGCGACACGAGCGCGCAGCAGCGCATGCCGCTCGTCGCCCGGCTCGGCTCCGCGAAC
AAATCGCTGTTCGAAGTGATCGCGCTGATGGAGAACAACATCGAGGAGCCGCTGTCACGCGAAGAACTCGCGCGGCTCGC
GAACATGTCGCAGCGGCAGTTGCAGCGCCTCTTTCGCGAGCATCTCGGCATGACGCCGACGCATTACTACCTGACGCTGC
GCCTGCGCCGCGCGCGCGAGCTGCTGCTGCAAACCGACATGTCGATCATGCACATCACGATGGCGTGCGGCTTCCAATCC
GCGTGCCACTTCAGCAAGAGCTACCGCGACGCGTTCGGCACCGCGCCGACGCGCGAGCGCCGCAAGCAGGTCGCGCCGCT
CGCGCAGCCGTCGATGCCGAGCGGCGCGCCCGCGCCGTCGATGATGCTGCACGCGTGA

Upstream 100 bases:

>100_bases
CACTCGCGCGGCACCGCCGCTCACGGTTACGGTGCGGCGCAGCGAAAGGCCGCGGGCGGACGGCCCTGCCGATCTAGGGT
TTAGCCGTATGGCACGCTTG

Downstream 100 bases:

>100_bases
GTCGCGCCGCCGGGCCGTGCCGAGCGCCGTGAACGAGCGTCCACGGAAACCGGCATTCGAAACCGGCCCCCGAAATCGCA
TACCGAAACGAACGGCCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MRSISQYASRAPGRIKIRFKERFPMSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMV
TASNGLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKARLLAGYACAIHWENL
SALKEEFPDTRFLKELFVIDRDRVTCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSAN
KSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQS
ACHFSKSYRDAFGTAPTRERRKQVAPLAQPSMPSGAPAPSMMLHA

Sequences:

>Translated_365_residues
MRSISQYASRAPGRIKIRFKERFPMSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMV
TASNGLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKARLLAGYACAIHWENL
SALKEEFPDTRFLKELFVIDRDRVTCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSAN
KSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQS
ACHFSKSYRDAFGTAPTRERRKQVAPLAQPSMPSGAPAPSMMLHA
>Mature_365_residues
MRSISQYASRAPGRIKIRFKERFPMSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMV
TASNGLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKARLLAGYACAIHWENL
SALKEEFPDTRFLKELFVIDRDRVTCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSAN
KSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQS
ACHFSKSYRDAFGTAPTRERRKQVAPLAQPSMPSGAPAPSMMLHA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40578; Mature: 40578

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSISQYASRAPGRIKIRFKERFPMSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMAN
CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
YLSGQPLYRWSIISPQGGMVTASNGLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLA
HHCCCCEEEEEEECCCCCEEEECCCEEECCCCHHHCCCCCEEEEECCCCCCCCCCHHHHH
ALRRFARAGVALGSLCTGTYALAKARLLAGYACAIHWENLSALKEEFPDTRFLKELFVID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHHHHHHHHHHHC
RDRVTCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSAN
CCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCC
KSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARE
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
LLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQVAPLAQPSMPSGAPAPS
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
MMLHA
CCCCC
>Mature Secondary Structure
MRSISQYASRAPGRIKIRFKERFPMSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMAN
CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
YLSGQPLYRWSIISPQGGMVTASNGLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLA
HHCCCCEEEEEEECCCCCEEEECCCEEECCCCHHHCCCCCEEEEECCCCCCCCCCHHHHH
ALRRFARAGVALGSLCTGTYALAKARLLAGYACAIHWENLSALKEEFPDTRFLKELFVID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHHHHHHHHHHHC
RDRVTCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSAN
CCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCC
KSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARE
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
LLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQVAPLAQPSMPSGAPAPS
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
MMLHA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]