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The map label for this gene is ywbI [H]

Identifier: 126443570

GI number: 126443570

Start: 2248296

End: 2249207

Strand: Reverse

Name: ywbI [H]

Synonym: BURPS668_A2306

Alternate gene names: 126443570

Gene position: 2249207-2248296 (Counterclockwise)

Preceding gene: 126444368

Following gene: 126442992

Centisome position: 71.92

GC content: 68.2

Gene sequence:

>912_bases
ATGCGTTTCGATATCACCGATCTGCGTCTGTTCGTCTCCGTCATCGAGGCGGGCAGCATCACGCACGGCGCGAGCCGGGT
CAATCTGGCGCTCGGCTCCGCAAGCGGGCGCATCAAGCAGATGGAGGAGACCGCCGGAGTGGCGCTCCTCGTGCGCGAAC
GGCTCGGCGTGAAGCCGACCGAGGCGGGGCACACGTTGCTGCGCCATGCGCGCGCGACGCTTGCGTCGATGCAGCGCCTC
ACCGACGATCTCGGCGAATTCGCAAACGGGCTGCGCGGCACGGTGCGGCTGTTGACCAACACCAACGCGCTGACCGAATT
CCTGCCCGGCCCCATCGCGCGCTTTCTCGCGCAGCATCGCAACGTGAGCGTCGAACTGGAGGAAATGCTGAGCCACGAGA
TCGTCGCGGCGCTCGTCGAAGGCGTCGCGGACATCGGCATCGTCGCGGCGCGCGAGGACATAGGCGGGCTGCAGCGCTTT
CCGTTCGCGACCGACCGCCTGTGCGCGGTCGTGCCCGCGTCGCAGCCGGAGTTCGCGAACGCGCGCGACGTATCGTTCGC
GTCGCTGCTCGACTACGATTTCGTCGGCTACGCGGCCGGCGCGGCGATCCAGACGTATCTGGAAGCGCATGCGCGCGAGT
TGCATCGGCGGCTCCGGCCGCGCATTCATCTGCGCAGCTTCGATGCGATCTGCCGCCTCGTCGAGAACGGCGTCGGCGTA
TCGGTGGTGCCCGAATCCGCCGCGCGGCGCTGCAGGCGCACGATGTCGATCAAGACGCTCGCGCTGCGCGAGAACTGGGC
GCTGCGCGAAATGAGGGTGTGCGTGGCTGATGTCGACGCGTTGCCGATGTACGCGCGGCAGTTGCTCGGCCATCTCGTCG
AAAGCGGCCGGGCGTTCGCGCGCCGCCGTTAG

Upstream 100 bases:

>100_bases
TCGTTCGGCACGTTGTGAAAACCCCCGGTGTCGTTCACAATGCCCGACAGCCGACGCGAGCCTTCGATCCGGCCGTAGGC
TCGTCGATCCGGGAGGGCGC

Downstream 100 bases:

>100_bases
CCTTCCGGTTCGCCGAAGGCTGCCCCCGAAAATGCCGCATTGTCCGGCGCGCGACGGGTGGCGACAATGCACTCGTCGTT
TCGCTCAACGAGGAGTGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDIGGLQRF
PFATDRLCAVVPASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR

Sequences:

>Translated_303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDIGGLQRF
PFATDRLCAVVPASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR
>Mature_303_residues
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPTEAGHTLLRHARATLASMQRL
TDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHRNVSVELEEMLSHEIVAALVEGVADIGIVAAREDIGGLQRF
PFATDRLCAVVPASQPEFANARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFARRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=23.3606557377049, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=244, Percent_Identity=25.4098360655738, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787589, Length=311, Percent_Identity=25.08038585209, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787806, Length=279, Percent_Identity=22.9390681003584, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33345; Mature: 33345

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
EAGHTLLRHARATLASMQRLTDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHC
NVSVELEEMLSHEIVAALVEGVADIGIVAAREDIGGLQRFPFATDRLCAVVPASQPEFAN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHCCCCCCCCCEEECCCCCCCCCC
ARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCE
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFA
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
CCC
>Mature Secondary Structure
MRFDITDLRLFVSVIEAGSITHGASRVNLALGSASGRIKQMEETAGVALLVRERLGVKPT
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
EAGHTLLRHARATLASMQRLTDDLGEFANGLRGTVRLLTNTNALTEFLPGPIARFLAQHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHC
NVSVELEEMLSHEIVAALVEGVADIGIVAAREDIGGLQRFPFATDRLCAVVPASQPEFAN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHCCCCCCCCCEEECCCCCCCCCC
ARDVSFASLLDYDFVGYAAGAAIQTYLEAHARELHRRLRPRIHLRSFDAICRLVENGVGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCE
SVVPESAARRCRRTMSIKTLALRENWALREMRVCVADVDALPMYARQLLGHLVESGRAFA
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]