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The map label for this gene is spaO [H]

Identifier: 126443367

GI number: 126443367

Start: 2104736

End: 2105707

Strand: Reverse

Name: spaO [H]

Synonym: BURPS668_A2168

Alternate gene names: 126443367

Gene position: 2105707-2104736 (Counterclockwise)

Preceding gene: 126444099

Following gene: 126442644

Centisome position: 67.33

GC content: 74.28

Gene sequence:

>972_bases
ATGAGCGCGCGCTATACGTTGTTCAGGCGCGTCGCGCCCGCGGAATTGCCGCTGTACCGCCGTGCGCGGGCGCTGCGCGC
GGCGGGCGAGCACGCCGCGCTGCGCACGATCGCGCCGCCGCGCGGCTATGCGGCGCTGCGCGCGACGTGGCGGGGCGTCG
AGCACGACGGCTGGGTCGACCTCGACGATCTGATGCGCCGCCGCTACCCGGCGCTCGGCGCGCTCGCGTGGCGCGCGCTC
GACAGGCGCTACGCGCTCGATTTGCTGAGCGGGCGGGACGCGGTGGCCGAGCTGCCCGCGCCGCCCGGCGGCTGGGCGCA
TGTGCGGCTCGTCGATCTCGTCGAGCGCGCGCTGCCCGCCGAGCCGCTGCTGTGTTTCGACACCCCGGGCCGCGCGCGTG
CGCTGTTCCGCGCGTTCCCGGACGAAGCGCCCGCGGCGCGCGCCGTGGCCGACATCGGCGGCGTGCCGCTCACGATGCGC
TTCGCGATCGGCACCGCGCGCCTGCCGCTCGCGCTGTTGCCCGCCGTCGCGCCGGGCGACGTGCTGCTCGTATGCGCGCC
GCGCAACGTGGTCCGCATCGGGGCGCGCGCACTGTGTGAATTTTGCTGCGAAGGAGAAAACATCATGCTGAACGAACCCC
TGGCCGACTCCGCGATCGACGCCCTGCACGACGCATCGCACGACGCATCGCACGACGAACCGACGGCGGCGCACGCGCCG
CCGGCTTTCGACATCGATGCGCTGCCCGTCACGCTGGAGTTCGTGCTGCACGACGAACGCGTGACGGTCGCGCAGCTCGC
GGGCTGCCACCCGGGCATGGTGCTGCCGCTGCGCGGTGCGCCGGGCGAGGTGACGATCCGCGCGAACGGCCAGCCGTTCG
GCCGCGGCGAGCTGATCCAGGTCGGCGAGCAGCTCGCGGTCGAGGTGAAGGCGCTCTGGCGCGCGAAGCCGGCGGCGTGC
GATGGCGAATAA

Upstream 100 bases:

>100_bases
CCGGATGGACGGTCGAATTCGATCGGTCGCGCGCGGATGATGACAGCGGCGGCCGCTCGCCGTGGCGGCGCGCGCGGCAG
GAGCCGGAGGCGGATGAGCG

Downstream 100 bases:

>100_bases
CGAAATCGCGCTGATCGTCCTGCTGACGGCGGCCACGCTCGTGCCGTTCGTCGTCGCGGCGGGCTCGTGCTTCATCAAGT
TCTCGATCGTGCTCGTGCTC

Product: type III secretion system apparatus protein YscQ/HrcQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSARYTLFRRVAPAELPLYRRARALRAAGEHAALRTIAPPRGYAALRATWRGVEHDGWVDLDDLMRRRYPALGALAWRAL
DRRYALDLLSGRDAVAELPAPPGGWAHVRLVDLVERALPAEPLLCFDTPGRARALFRAFPDEAPAARAVADIGGVPLTMR
FAIGTARLPLALLPAVAPGDVLLVCAPRNVVRIGARALCEFCCEGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAP
PAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGEVTIRANGQPFGRGELIQVGEQLAVEVKALWRAKPAAC
DGE

Sequences:

>Translated_323_residues
MSARYTLFRRVAPAELPLYRRARALRAAGEHAALRTIAPPRGYAALRATWRGVEHDGWVDLDDLMRRRYPALGALAWRAL
DRRYALDLLSGRDAVAELPAPPGGWAHVRLVDLVERALPAEPLLCFDTPGRARALFRAFPDEAPAARAVADIGGVPLTMR
FAIGTARLPLALLPAVAPGDVLLVCAPRNVVRIGARALCEFCCEGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAP
PAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGEVTIRANGQPFGRGELIQVGEQLAVEVKALWRAKPAAC
DGE
>Mature_322_residues
SARYTLFRRVAPAELPLYRRARALRAAGEHAALRTIAPPRGYAALRATWRGVEHDGWVDLDDLMRRRYPALGALAWRALD
RRYALDLLSGRDAVAELPAPPGGWAHVRLVDLVERALPAEPLLCFDTPGRARALFRAFPDEAPAARAVADIGGVPLTMRF
AIGTARLPLALLPAVAPGDVLLVCAPRNVVRIGARALCEFCCEGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPP
AFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGEVTIRANGQPFGRGELIQVGEQLAVEVKALWRAKPAACD
GE

Specific function: Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001543
- InterPro:   IPR003283
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 34774; Mature: 34643

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARYTLFRRVAPAELPLYRRARALRAAGEHAALRTIAPPRGYAALRATWRGVEHDGWVD
CCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCCCCCCC
LDDLMRRRYPALGALAWRALDRRYALDLLSGRDAVAELPAPPGGWAHVRLVDLVERALPA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCC
EPLLCFDTPGRARALFRAFPDEAPAARAVADIGGVPLTMRFAIGTARLPLALLPAVAPGD
CCEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCCCC
VLLVCAPRNVVRIGARALCEFCCEGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAP
EEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGEVTIRANGQPFGRGELIQ
CCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHH
VGEQLAVEVKALWRAKPAACDGE
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SARYTLFRRVAPAELPLYRRARALRAAGEHAALRTIAPPRGYAALRATWRGVEHDGWVD
CCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCCCCCCC
LDDLMRRRYPALGALAWRALDRRYALDLLSGRDAVAELPAPPGGWAHVRLVDLVERALPA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCC
EPLLCFDTPGRARALFRAFPDEAPAARAVADIGGVPLTMRFAIGTARLPLALLPAVAPGD
CCEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCCCC
VLLVCAPRNVVRIGARALCEFCCEGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAP
EEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGEVTIRANGQPFGRGELIQ
CCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHH
VGEQLAVEVKALWRAKPAACDGE
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7638176 [H]