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The map label for this gene is fliR [H]

Identifier: 126443144

GI number: 126443144

Start: 198646

End: 199422

Strand: Reverse

Name: fliR [H]

Synonym: BURPS668_A0214

Alternate gene names: 126443144

Gene position: 199422-198646 (Counterclockwise)

Preceding gene: 126445424

Following gene: 126442503

Centisome position: 6.38

GC content: 65.38

Gene sequence:

>777_bases
ATGGACGCCATCGTCGCCGCCGCTGCCGAGTGGCTCGCACGGGCATGGTGGCCGTTCTGCCGGATTCTCGCCGCGTTGAG
CGCAGCGCCGTTCATCGGCGAAAGCACCGTACCTGCGCGGATGCGCGTGACGATCGCACTGTTCCTCGCGCTGATCGCGC
TGCCCGCCGTCGACCCCGTCGCCATTCCGGTCTTCTCCGCCCGCGGCGCGCTCGCCGCCGCCGAGCAGATCCTGATCGGC
TTGCTGTTCGGCATGCTCTTTCACTTCGTGCAGGCCGTCTTCATGATGCTCGGCTACCTCGTCGCCTCGCAAATGGGCCT
CGCGATGGCAGTGATGAACGACCCGCTCAACGGCGCGACGTCGGATGTCGTGTCCGGCTTCATGCTCGTGGCAAGCATCC
TGCTGTTCTTCGCGATCGACGCGCACCTCGTCGTCGTTCAGGTGCTCTATACGAGTTTTCGCGTCTGGCCCGTCGGCACG
CCGATCGATCTGCCTTCGCTCAAGCCGCTCGCCTACCAGGCCGCCTGGCTCTTCTCGACCACGACGCTCCTCGCGGCGCC
GCTCGTGTTCGCCACGGTCGTCTTGCAGATCGGCAAGAGCTATCTGTCCCGCGCGACGCCCAGCATCAATCTGTTTTCCC
TCGGCTTCGCGATCATGACCGTATTCGGACTGCTCATGCTCGGCGCCATGCTCAAGGGCCTGCCCGCGCATTACGCCAGC
ATGACGCGGCACGTTCTCGACGTGCTCGAGCATCATCTGGGAGCCGCGCGTGGCTAA

Upstream 100 bases:

>100_bases
CTGGCGATACTCGTGCTGGCAGGGCACTGGCTCGTACAGACACTGATGGATTACTGCGTCGCAACCTTCACGCGCGCGGC
ACAACTGGTCGGCTGACGGG

Downstream 100 bases:

>100_bases
CCAGGACAGTGGCGACAAGAGCGAGAAAGCCACGCCGCAAAAGCTGCGCAACGCGCGCAAGCAAGGCCAGATCGCGCGCT
CGCGCGACCTGTCGACCGCG

Product: flagellar biosynthesis pathway, component FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MDAIVAAAAEWLARAWWPFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPVAIPVFSARGALAAAEQILIG
LLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGT
PIDLPSLKPLAYQAAWLFSTTTLLAAPLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYAS
MTRHVLDVLEHHLGAARG

Sequences:

>Translated_258_residues
MDAIVAAAAEWLARAWWPFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPVAIPVFSARGALAAAEQILIG
LLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGT
PIDLPSLKPLAYQAAWLFSTTTLLAAPLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYAS
MTRHVLDVLEHHLGAARG
>Mature_258_residues
MDAIVAAAAEWLARAWWPFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDPVAIPVFSARGALAAAEQILIG
LLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGT
PIDLPSLKPLAYQAAWLFSTTTLLAAPLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYAS
MTRHVLDVLEHHLGAARG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=223, Percent_Identity=28.6995515695067, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27559; Mature: 27559

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]