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The map label for this gene is yciR [C]

Identifier: 126442988

GI number: 126442988

Start: 1122430

End: 1124496

Strand: Reverse

Name: yciR [C]

Synonym: BURPS668_A1182

Alternate gene names: 126442988

Gene position: 1124496-1122430 (Counterclockwise)

Preceding gene: 126442555

Following gene: 126443489

Centisome position: 35.96

GC content: 68.26

Gene sequence:

>2067_bases
ATGCACGGCACCTACAACCTTTGGCTGGTCGCGCTCTCGCTTGCGGTCGCCACGCTCGCCTCCTATACCGCGCTCGACCT
GTCGGGCCGGATCGCGCTGCTCGCGCACGGCCGGCTGCGCCATGCGTGGCTCGCCGGCAGCGCGGTCGCGATGGGTATCG
GCATCGGGTCGATGCACGTCATCGGCGTGCTGTCGGTGACGCTGCCCATCCGCATCGGCTTCGACGCCGCGATCACCGGC
CTGTCGCTCGCGCTCGCGATCGTGGTGTCCGGCTTCGCGCTGTATACGATCGCCGGCGCCCAACTGACGAGGCTGCGGCT
CGGCATCGGCGGCGTTCTGATGGGGCTCGGCATCGCGGGCATGCATTACACCGGCGACGCCGCGATGCGGATGAAGCCCG
CCATCGAGTACGACCCGCTGCTGTTCACGGCATCGATCGTCATCGCGCTCGTCGCCTCGACGGTCGCGCTATGGATCGCG
CAGACGCTCATCGGCATCGGCCGATCGCGGCTGGCCCGCATCGGCACGGCCGGCGTGATGGGCGCGGCGATCACCGGCAT
GCACTACACCGCCTACGCCGCCGCGATCTTCGCCCCCGGCTCGACCTGCGGCGCGGCGACCGGCATCGATCTGCGCTGGC
TCGCGGCGACCGTCGCGCTCTTCACGGTCGCGATCCTGATCGTCGCGCTGATCCTGTCGCACTTCGACGTGCGCACGACG
CTGCTCGCCGGATCGGTTTCGCGCCTGAGCGGCCAGATCGTGCGCATGGCCGCATTCGACACGCTCACGGATCTGCCGAA
CCGCCGCACGCTGAACGAGCACCTCGGCCGCGCGCTCGCGGCGGCGCGGGCGCGCGGCGGCAAGCTGGCGATCCTGTTCA
TGGATCTCGACGGATTCAAGACCATCAACGATTCGCTCGGCCACCCGGCCGGCGACGAAGTGCTGAAAACCTTCTCGCAG
CGGCTGCTGCGCTGCGTGCGAGACGGCGACATCGTCGCGCGCCTCGGCGGCGACGAATTCGTCGTGCTGCTGGAGAGCGT
TTCGTCGGACGATGAAGCGGCCCGCGTCGCGCGCAACGTCCTCGAACGGATGCGCAAGGGGCGCTGGAACGACGGGCAGG
CGCTACAGGTCACGCCGAGCATCGGCATCGCGCTGTATCCGAAGGACGGCGATACGGCCGACACGCTGCTCAGGCACGCC
GATGCGGCGATGTATGCGGCCAAGCGCAGCGGCCGCTGCACCTACCGCTTCTTCGAGGCGACGATGGACGAGGCGGCGGC
GCGCGCGCTCAAGCTTCAGCACGCGCTGCACGAGGCGCTCGATTCCGACTACTTCTCGCTGTGCTTCCAGCCGAAATTCC
GCTGCGACGGCCACCGGCTCGCGGGCGCGGAAGCGCTGTTGCGCCTGAACCATCCGACGCTCGGCAAACTCGCGCCGATG
GAATTCATCCCCGTGGCCGAACGCTCCGGCCAGATCATCGAGATCGGCTACTGGGTGATCCGCGAAACGTGCCGGCACCT
CAGACGCTGGCGGTCCGCGCACAGGGCGGCCTGCCGCATCGCGATCAATCTGTCGCCTCGGCAGCTCGCGCAGCCGGATC
TCGTCGCGAACATCCTCGAGATCGTGCGGGCCGAGCACGTCGAGCCGCGCCAGTTGATGTTCGAGATCACCGAATCGGTC
GCGATGGAAGACCCGCCGCGCACGATCGAGATGATCCGGCTGTTCCAGGCGCACGGCTTCGAGATCGCGATCGACGACTT
CGGCACCGGCTATTCGAGCCTCGCCTATCTGCAGCGATTCGGCGCGAAGCAGCTCAAGATCGACCGATTCTTCACCCACG
CGCTCGACGAGCAAGGCCACGAAGGCGGCGCGATCGTCTCCGCGATCATCGCGCTCGCCCACTCGCTCGCGATGGACGTG
GTCGCCGAAGGTGTCGAGACGCGCTCGCAGCTCGACCGGCTCAAGACGCTGATGTGCGATGAAATCCAAGGGTTCCTGCT
CGGCCGCCCCGTGCCGCCGGAAGAGTTCGAGGCGATGGTGCCGCTGCATTCCGAGGCGCCGGCATGA

Upstream 100 bases:

>100_bases
CGGCGCGAATCGCCCCTCGCCGATCCGGGAAAGCCCGCTCTACGGAAAGGGCGCGCACACGCCGATAAACCCGTGAAATC
CGCCTGTCCGTCGAGAGTCC

Downstream 100 bases:

>100_bases
CGGTGACGCGGCGCGCATCCGCGCGCGGCCGCGCGCGTGGTTCGGCCGCTTTGCCGCTGGTTGGCGTTTGGGGGTTGGGC
TGAGGTTTCGGACCGGGAGC

Product: GGDEF domain/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 688

Protein sequence:

>688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGIGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGTAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRSGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA

Sequences:

>Translated_688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGIGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGTAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRSGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA
>Mature_688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGIGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGTAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRSGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=34.8341232227488, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=32.7231121281465, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=30.7875894988067, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=35.4838709677419, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1788849, Length=460, Percent_Identity=28.4782608695652, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=31.9672131147541, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=32.5, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=29.2, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=26.463700234192, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=31.6793893129771, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=31.9672131147541, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=38.1818181818182, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787055, Length=228, Percent_Identity=32.0175438596491, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=37.7358490566038, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=220, Percent_Identity=30, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=190, Percent_Identity=34.2105263157895, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=31.5, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=34.9397590361446, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=30.9090909090909, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=30.1587301587302, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=31.3131313131313, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=198, Percent_Identity=26.7676767676768, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.75, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=154, Percent_Identity=33.7662337662338, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74409; Mature: 74409

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGIGIGSMHV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCHHHH
IGVLSVTLPIRIGFDAAITGLSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAG
HHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
MHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIAQTLIGIGRSRLARIGTAGVM
EEECCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHH
GAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNEHLGRALAAARARGGKLAILFMDLDGFK
HHHCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
TINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNV
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEA
HHHHHCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
TMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCC
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILE
CEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHCCHHHHHHHHH
IVRAEHVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC
GAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCD
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQGFLLGRPVPPEEFEAMVPLHSEAPA
HHHHHHCCCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGIGIGSMHV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCHHHH
IGVLSVTLPIRIGFDAAITGLSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAG
HHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
MHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIAQTLIGIGRSRLARIGTAGVM
EEECCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHH
GAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNEHLGRALAAARARGGKLAILFMDLDGFK
HHHCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
TINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNV
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEA
HHHHHCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
TMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCC
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILE
CEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHCCHHHHHHHHH
IVRAEHVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC
GAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCD
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQGFLLGRPVPPEEFEAMVPLHSEAPA
HHHHHHCCCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]