Click here to switch to the map view.

The map label for this gene is cyc1 [H]

Identifier: 126442548

GI number: 126442548

Start: 921847

End: 922089

Strand: Reverse

Name: cyc1 [H]

Synonym: BURPS668_A0943

Alternate gene names: 126442548

Gene position: 922089-921847 (Counterclockwise)

Preceding gene: 126443607

Following gene: 284159990

Centisome position: 29.48

GC content: 65.43

Gene sequence:

>243_bases
ATGACATACATGACATACATGACATACGTGACATACGCGGCGTGCGCGTCGTGCCACGGGCAAAACGGCCAAGGCGCGGG
CACGTTCCCGCGGCTCGCGGGACAGCACGCCGATTATCTGCGGCAGCAGATCGATGTCTTCAGGAACGGCATGCGCGCGA
ACGCGCCGGTGATGAGCGCCGTCGCGCATACGCTCGATGGCGACCCGGCGAAGGCCGTCGCGGCGTGGCTGCAATCGCGC
TAG

Upstream 100 bases:

>100_bases
TCGGGGGTTCGATGCGGCGAGTCTACGCGGTGCGCCGGCGTATCGTCCACGCATAAGTTATGCGCCCGGCTCGGCATGTG
CGGCGACATGGGCGACATAC

Downstream 100 bases:

>100_bases
CGATCGCGACGCGCGCGCACGGCCGCACGGCCGCTCGGCGGCGCGCGCGGCTCAGCGATTCATGCCGAAATCGCCCGCGT
CCTCGTCGCCTGCGTCGAAC

Product: putative cytochrome c

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MTYMTYMTYVTYAACASCHGQNGQGAGTFPRLAGQHADYLRQQIDVFRNGMRANAPVMSAVAHTLDGDPAKAVAAWLQSR

Sequences:

>Translated_80_residues
MTYMTYMTYVTYAACASCHGQNGQGAGTFPRLAGQHADYLRQQIDVFRNGMRANAPVMSAVAHTLDGDPAKAVAAWLQSR
>Mature_79_residues
TYMTYMTYVTYAACASCHGQNGQGAGTFPRLAGQHADYLRQQIDVFRNGMRANAPVMSAVAHTLDGDPAKAVAAWLQSR

Specific function: Diheme, high potential cytochrome c [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 8684; Mature: 8553

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYMTYMTYVTYAACASCHGQNGQGAGTFPRLAGQHADYLRQQIDVFRNGMRANAPVMSA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH
VAHTLDGDPAKAVAAWLQSR
HHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TYMTYMTYVTYAACASCHGQNGQGAGTFPRLAGQHADYLRQQIDVFRNGMRANAPVMSA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH
VAHTLDGDPAKAVAAWLQSR
HHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973648 [H]