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The map label for this gene is radC [C]

Identifier: 126209424

GI number: 126209424

Start: 2198069

End: 2198731

Strand: Direct

Name: radC [C]

Synonym: APL_1970

Alternate gene names: 126209424

Gene position: 2198069-2198731 (Clockwise)

Preceding gene: 126209418

Following gene: 126209425

Centisome position: 96.64

GC content: 39.67

Gene sequence:

>663_bases
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Upstream 100 bases:

>100_bases
GTTTTTGCGATCCGTGTCGAAAAAATTAAATTTTCCTTTTGTGTCAATTAATTAGCTTCTTTATGCTGTTTTCTTATTCG
GTTTAATTGAGCAAAAAATA

Downstream 100 bases:

>100_bases
AATAATTGATAAATTGAGGCTTGAATAACGCTATTAAAGCGAGTATAATCCGTGGTCTTTAAATATGACTTTGGTCGGGC
TGTGCCTGACGAGGCAATTA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Sequences:

>Translated_220_residues
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR
>Mature_220_residues
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=45.1162790697674, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI2367100, Length=127, Percent_Identity=46.4566929133858, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788312, Length=127, Percent_Identity=48.0314960629921, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788997, Length=101, Percent_Identity=50.4950495049505, Blast_Score=120, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1970_ACTP2 (A3N3Q8)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054649.1
- ProteinModelPortal:   A3N3Q8
- SMR:   A3N3Q8
- STRING:   A3N3Q8
- GeneID:   4848589
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1970
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   A3N3Q8
- ProtClustDB:   PRK00024
- BioCyc:   APLE416269:APL_1970-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25014; Mature: 25014

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSAD
CCCEEECCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LATFCRMKGLGQTQFIQLQASKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREV
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCEE
FMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKCNAAAIIVAHNHPSGNCTPSE
EEEEEECCCCCHHHHHHHHEECCCCCEECHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
SDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHCCC
>Mature Secondary Structure
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSAD
CCCEEECCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LATFCRMKGLGQTQFIQLQASKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREV
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCEE
FMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKCNAAAIIVAHNHPSGNCTPSE
EEEEEECCCCCHHHHHHHHEECCCCCEECHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
SDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA